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Re: Updating to latest Bioconductor release
From: |
zimoun |
Subject: |
Re: Updating to latest Bioconductor release |
Date: |
Mon, 16 Nov 2020 13:59:25 +0100 |
Hi again, :-)
On Mon, 16 Nov 2020 at 13:38, Roel Janssen <roel@gnu.org> wrote:
> Well, I see we're getting R packages that fail to build because the
> source cannot be downloaded (anymore), due to the outdated
> Bioconductor version
Do you mean related to #39885?
<http://issues.guix.gnu.org/issue/39885>
> version. So if we can do an upgrade to 3.12 soon, and add the
> 'workflow' type later, that'd be my preferred route.
>
> So to achieve that, I think we need to:
> 1. Update the Bioconductor version to 3.12
> 2. Update/build the Bioconductor packages that are already in Guix.
> 3. --> When all build failures have been resolved, push to master?
Ok.
> 4. Add the bits for 'workflow' packages.
> 5. Add workflow packages / adjust the ones we have (do we have any?)
> and build/test them.
I do not think we have any. But I have not checked everything neither. :-)
<https://bioconductor.org/packages/3.11/workflows/>
All the best,
simon
Re: Updating to latest Bioconductor release, zimoun, 2020/11/17
- Re: Updating to latest Bioconductor release, Roel Janssen, 2020/11/18
- Re: Updating to latest Bioconductor release, zimoun, 2020/11/18
- Re: Updating to latest Bioconductor release, Roel Janssen, 2020/11/18
- Re: Updating to latest Bioconductor release, zimoun, 2020/11/18
- Re: Updating to latest Bioconductor release, Roel Janssen, 2020/11/18
- Re: Updating to latest Bioconductor release, zimoun, 2020/11/18
- Re: Updating to latest Bioconductor release, Roel Janssen, 2020/11/19
- Re: Updating to latest Bioconductor release, zimoun, 2020/11/19
- Re: Updating to latest Bioconductor release, Roel Janssen, 2020/11/19