From d9eee184cf80252092c34864d492527ee768a7fb Mon Sep 17 00:00:00 2001 From: Kei Kebreau Date: Thu, 7 Sep 2017 09:36:28 -0400 Subject: [PATCH] gnu: Fix build failures caused by commit d10092b849153dc27cfed0a9601fde6c7bdec918. * gnu/packages/bioinformatics.scm (seek)[arguments]: Modify unpack phase. * gnu/packages/ci.scm (cuirass)[arguments]: Add patch-/bin/sh phase. --- gnu/packages/bioinformatics.scm | 2 ++ gnu/packages/ci.scm | 7 ++++++- 2 files changed, 8 insertions(+), 1 deletion(-) diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm index bf8eb2e69..699c463bf 100644 --- a/gnu/packages/bioinformatics.scm +++ b/gnu/packages/bioinformatics.scm @@ -4488,6 +4488,8 @@ distribution, coverage uniformity, strand specificity, etc.") (modify-phases %standard-phases (add-after 'unpack 'bootstrap (lambda _ + (substitute* "gen_tools_am" + (("/usr/bin/env perl") (which "perl"))) (zero? (system* "bash" "gen_auto")))) (add-after 'build 'build-additional-tools (lambda* (#:key make-flags #:allow-other-keys) diff --git a/gnu/packages/ci.scm b/gnu/packages/ci.scm index c449754be..f3259bfcd 100644 --- a/gnu/packages/ci.scm +++ b/gnu/packages/ci.scm @@ -216,7 +216,12 @@ their dependencies.") (substitute* "Makefile.am" (("tests/repo.scm \\\\") "\\")) #t)) - (add-after 'disable-repo-tests 'bootstrap + (add-after 'disable-repo-tests 'patch-/bin/sh + (lambda _ + (substitute* "build-aux/git-version-gen" + (("#!/bin/sh") (string-append "#!" (which "sh")))) + #t)) + (add-after 'patch-/bin/sh 'bootstrap (lambda _ (zero? (system* "sh" "bootstrap")))) (add-after 'install 'wrap-program (lambda* (#:key inputs outputs #:allow-other-keys) -- 2.14.1