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[bug#33099] [PATCH] I add r-aspi package appended to cran.scm file


From: Laura Lazzati
Subject: [bug#33099] [PATCH] I add r-aspi package appended to cran.scm file
Date: Sat, 20 Oct 2018 17:28:59 -0300

Thank you all for the feedback :)
I will apply all the changes and send the new version.
Shall I send the modified patch to the debbugs mail that is in the CC of this mail?

On Sat, Oct 20, 2018 at 8:48 AM Gábor Boskovits <address@hidden> wrote:
Hello guix,

Gábor Boskovits <address@hidden> ezt írta (időpont: 2018. okt.
20., Szo, 13:05):
>
> Hello Laura,
>
> Gábor Boskovits <address@hidden> ezt írta (időpont: 2018. okt.
> 20., Szo, 10:43):
> >
> > Hello Laura,
> >
> > Ricardo Wurmus <address@hidden> ezt írta (időpont: 2018.
> > okt. 20., Szo, 10:17):
> > >
> > >
> > > Hi Laura,
> > >
> > > congratulations on your first patch to Guix!
> > >
> > > What follows are a few comments on minor changes that I would like to
> > > see before applying the patch to Guix.
> > >
> > > > From 132c8bf1e57f30485e3701ce01ea9d1ac7207e7c Mon Sep 17 00:00:00 2001
> > > > From: laura <address@hidden>
> > > > Date: Fri, 19 Oct 2018 19:15:37 -0300
> > > > Subject: [PATCH] I add r-aspi package appended to cran.scm file
> > > >
> > > > ---
> > > >  gnu/packages/cran.scm | 19 +++++++++++++++++++
> > > >  1 file changed, 19 insertions(+)
> > >
> > > For commits to Guix, we use a somewhat strict commit message format.
> > > You can take a look at the commit log to get a feel for it.  In the case
> > > of adding r-aspi to cran.scm this would be the expected commit message:
> > >
> > > --8<---------------cut here---------------start------------->8---
> > > gnu: Add r-aspi.
> > >
> > > * gnu/packages/cran.scm (r-aspi): New variable.
> > > --8<---------------cut here---------------end--------------->8---
> > >
> > > The first line is always a concise summary.  This is followed by a
> > > change log listing modified files and how they were modified.
> > >
> >
> > You can also see git log for examples.
> >
> > > > diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
> > > > index efcc2dccb..0d8ee6a97 100644
> > > > --- a/gnu/packages/cran.scm
> > > > +++ b/gnu/packages/cran.scm
> > > > @@ -6256,3 +6256,22 @@ a header row or not.  The dataset should contain
> > > > only one independent variable
> > > >  (x) and one dependent variable (y) and can contain a weight for each
> > > >  observation.")
> > > >      (license license:gpl2)))
> > > > +
> > > > +(define-public r-aspi
> > > > +  (package
> > > > +    (name "r-aspi")
> > > > +    (version "0.2.0")
> > > > +    (source
> > > > +     (origin
> > > > +       (method url-fetch)
> > > > +       (uri (cran-uri "aspi" version))
> > > > +       (sha256
> > > > +        (base32
> > > > +         "0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"))))
> > > > +    (build-system r-build-system)
> > > > +    (home-page "https://cran.r-project.org/web/packages/aspi/")
> > > > +    (synopsis "Analysis of Symmetry of Parasitic Infections")
> > >
> > > Please use lowercase for all words except for the first.  CRAN synopses
> > > are usually in titlecase and the importer can’t automatically figure out
> > > which words should be converted, so this needs to be done manually.
Sorry for this, I just copied the comments in cran's website, I'll change that. 
> > >
> > > > +    (description
> > > > +     "Tools for the analysis and visualization of bilateral asymmetry in
> > > > + parasitic infections.")
> > >
> > > Please use a complete sentence for the description.  The easiest way is
> > > probably to just prepend “This package provides”.
> > >
> > > > +    (license license:gpl3)))
> > >
> > > I checked the source files and noticed that it’s actually GPL 3 or
> > > later.  Here’s an except from the header of aspi.R:
I guess this mistake was because in one of the several times of running ./pre-inst-env guix build r-aspi I was getting an error about the gpl licence. I will change this too.
> > >
> > > --8<---------------cut here---------------start------------->8---
> > > #  Analysis of Symmetry of Parasitic Infections is free software: you can        #
> > > #  redistribute it and/or modify it under the terms of the GNU General Public    #
> > > #  License as published by the Free Software Foundation, either version 3 of     #
> > > #  the License, or (at your option) any later version.                           #
> > > --8<---------------cut here---------------end--------------->8---
> > >
> > > So this really should be “license:gpl3+”.
> > >
> > > (I haven’t tried building the package yet.)
> > >
> >
> > I will try this and report back.
> >
>
> It builds for me fine, so with the suggestions Ricardo mentioned I think
> it is good to go.
>
> > > I think it’s fine to apply the patch with these minor changes.
> > >
> > > --
> > > Ricardo
>
> I had problem with applying this directly with git am, it
> kept telling me the patch is corrupt on line 10.
> Can someone have a look?
>

My bad, but it seems that at least partially debbugs is responsible for this,
It broke the long line in the patch, and it simply wrapped it around. I
downloaded the message from there using mbox. As there was no space
before the start of the line, the patch became corrupted.
Do you think this is bug?
I believe debbugs should not alter line endings.

> >
> > Thanks Ricardo for the fast review!
> >
> > Best regards,
> > g_bor
>
> Best regards,
> g_bor
Best regards,
g_bor
Regards!
Laura
 

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