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[bug#45399] [PATCH 05/10] gnu: r-ldblock: Move to (gnu packages biocondu
From: |
zimoun |
Subject: |
[bug#45399] [PATCH 05/10] gnu: r-ldblock: Move to (gnu packages bioconductor). |
Date: |
Wed, 23 Dec 2020 19:06:30 +0100 |
* gnu/packages/bioinformatics.scm (r-ldblock): Move from here...
* gnu/packages/bioconductor.scm (r-ldblock): ...to here.
---
gnu/packages/bioconductor.scm | 34 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 34 ---------------------------------
2 files changed, 34 insertions(+), 34 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1bf9a49272..40a02dbe7f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -9405,6 +9405,40 @@ maintaining all essential pathway attributes. The
package offers
functionalities including parsing, graph operation, visualization and etc.")
(license license:gpl2+)))
+(define-public r-ldblock
+ (package
+ (name "r-ldblock")
+ (version "1.20.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ldblock" version))
+ (sha256
+ (base32
+ "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
+ ("r-ensembldb" ,r-ensembldb)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicfiles" ,r-genomicfiles)
+ ("r-httr" ,r-httr)
+ ("r-matrix" ,r-matrix)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-snpstats" ,r-snpstats)
+ ("r-variantannotation" ,r-variantannotation)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/ldblock")
+ (synopsis "Data structures for linkage disequilibrium measures in
populations")
+ (description
+ "This package defines data structures for @dfn{linkage
+disequilibrium} (LD) measures in populations. Its purpose is to simplify
+handling of existing population-level data for the purpose of flexibly
+defining LD blocks.")
+ (license license:artistic2.0)))
+
(define-public r-pathview
(package
(name "r-pathview")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 67b4c4cb73..25021f1ee8 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10695,40 +10695,6 @@ metadata and outputs of the ChromImpute procedure
applied to ENCODE cell lines
by Ernst and Kellis.")
(license license:artistic2.0)))
-(define-public r-ldblock
- (package
- (name "r-ldblock")
- (version "1.20.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "ldblock" version))
- (sha256
- (base32
- "09i3ikv0axks9g842z1pjsc8x0fba51zyyc218h0bylbi1n9cdkm"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-ensdb-hsapiens-v75" ,r-ensdb-hsapiens-v75)
- ("r-ensembldb" ,r-ensembldb)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicfiles" ,r-genomicfiles)
- ("r-httr" ,r-httr)
- ("r-matrix" ,r-matrix)
- ("r-rsamtools" ,r-rsamtools)
- ("r-snpstats" ,r-snpstats)
- ("r-variantannotation" ,r-variantannotation)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/ldblock")
- (synopsis "Data structures for linkage disequilibrium measures in
populations")
- (description
- "This package defines data structures for @dfn{linkage
-disequilibrium} (LD) measures in populations. Its purpose is to simplify
-handling of existing population-level data for the purpose of flexibly
-defining LD blocks.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.29.2
- [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 01/10] gnu: r-sushi: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 02/10] gnu: r-gwascat: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 03/10] gnu: r-gviz: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 04/10] gnu: r-gqtlstats: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 06/10] gnu: r-erma: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 07/10] gnu: r-homo-sapiens: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 05/10] gnu: r-ldblock: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#45399] [PATCH 10/10] gnu: r-ggbio: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 08/10] gnu: r-snpstats: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- [bug#45399] [PATCH 09/10] gnu: r-gqtlstats: Move to (gnu packages bioconductor)., zimoun, 2020/12/23
- bug#45399: [PATCH 00/10] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2020/12/29