[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/math
From: |
Gerd Heber |
Subject: |
[bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0 |
Date: |
Sun, 28 Feb 2021 07:33:14 -0600 |
---
gnu/packages/maths.scm | 34 +++++++++++++++++++++++++++++++++-
1 file changed, 33 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/maths.scm b/gnu/packages/maths.scm
index 58433d4b0c..df101635ab 100644
--- a/gnu/packages/maths.scm
+++ b/gnu/packages/maths.scm
@@ -1451,7 +1451,7 @@ Swath).")
(license (license:non-copyleft home-page))))
(define-public hdf5-parallel-openmpi
- (package/inherit hdf5-1.10 ;use the latest
+ (package/inherit hdf5-1.10
(name "hdf5-parallel-openmpi")
(inputs
`(("mpi" ,openmpi)
@@ -1482,6 +1482,38 @@ Swath).")
#t))))))
(synopsis "Management suite for data with parallel IO support")))
+(define-public hdf5-1.12-parallel-openmpi
+ (package/inherit hdf5-1.12
+ (name "hdf5-1.12-parallel-openmpi")
+ (inputs
+ `(("mpi" ,openmpi)
+ ,@(package-inputs hdf5)))
+ (arguments
+ (substitute-keyword-arguments (package-arguments hdf5)
+ ((#:configure-flags flags)
+ ``("--enable-parallel"
+ ,@(delete "--enable-cxx"
+ (delete "--enable-threadsafe" ,flags))))
+ ((#:phases phases)
+ `(modify-phases ,phases
+ (add-after 'build 'mpi-setup
+ ,%openmpi-setup)
+ (add-before 'check 'patch-tests
+ (lambda _
+ ;; OpenMPI's mpirun will exit with non-zero status if it
+ ;; detects an "abnormal termination", i.e. any process not
+ ;; calling MPI_Finalize(). Since the test is explicitly
+ ;; avoiding MPI_Finalize so as not to have at_exit and thus
+ ;; H5C_flush_cache from being called, mpirun will always
+ ;; complain, so turn this test off.
+ (substitute* "testpar/Makefile"
+ (("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back)
+ (string-append front back "\n")))
+ (substitute* "tools/test/h5diff/testph5diff.sh"
+ (("/bin/sh") (which "sh")))
+ #t))))))
+ (synopsis "Management suite for data with parallel IO support")))
+
(define-public hdf5-blosc
(package
(name "hdf5-blosc")
--
2.30.1
- [bug#46830] [PATCH Added hdf5-1.12-parallel-openmpi] * gnu/packages/maths.scm (hdf5-1.12-parallel-openmpi): New package based on HDF5 1.12.0,
Gerd Heber <=