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[bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages biocondu
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:39 +0200 |
* gnu/packages/bioinformatics.scm (r-msnbase): Move from here...
* gnu/packages/bioconductor.scm (r-msnbase): ...to here.
---
gnu/packages/bioconductor.scm | 45 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 45 ---------------------------------
2 files changed, 45 insertions(+), 45 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b5787cb207..58c8336ce5 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2312,6 +2312,51 @@ and the assessment of differential expression. The
analysis methods apply to
different technologies, including microarrays, RNA-seq, and quantitative PCR.")
(license license:gpl2+)))
+(define-public r-msnbase
+ (package
+ (name "r-msnbase")
+ (version "2.16.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "MSnbase" version))
+ (sha256
+ (base32
+ "0hxzs9zzljywqxr7q388hshpy1pdryhl0zkwffqbxpf5pcf92d3h"))))
+ (properties `((upstream-name . "MSnbase")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affy" ,r-affy)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-digest" ,r-digest)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-impute" ,r-impute)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-maldiquant" ,r-maldiquant)
+ ("r-mass" ,r-mass)
+ ("r-mzid" ,r-mzid)
+ ("r-mzr" ,r-mzr)
+ ("r-pcamethods" ,r-pcamethods)
+ ("r-plyr" ,r-plyr)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-protgenerics" ,r-protgenerics)
+ ("r-rcpp" ,r-rcpp)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-scales" ,r-scales)
+ ("r-vsn" ,r-vsn)
+ ("r-xml" ,r-xml)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/lgatto/MSnbase")
+ (synopsis "Base functions and classes for MS-based proteomics")
+ (description
+ "This package provides basic plotting, data manipulation and processing
+of mass spectrometry based proteomics data.")
+ (license license:artistic2.0)))
+
(define-public r-msnid
(package
(name "r-msnid")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 5c2abe6e94..28893c40e7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9230,51 +9230,6 @@ the results is also provided. All PCA methods make use
of the same data
structure (pcaRes) to provide a common interface to the PCA results.")
(license license:gpl3+)))
-(define-public r-msnbase
- (package
- (name "r-msnbase")
- (version "2.16.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "MSnbase" version))
- (sha256
- (base32
- "0hxzs9zzljywqxr7q388hshpy1pdryhl0zkwffqbxpf5pcf92d3h"))))
- (properties `((upstream-name . "MSnbase")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-affy" ,r-affy)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-digest" ,r-digest)
- ("r-ggplot2" ,r-ggplot2)
- ("r-impute" ,r-impute)
- ("r-iranges" ,r-iranges)
- ("r-lattice" ,r-lattice)
- ("r-maldiquant" ,r-maldiquant)
- ("r-mass" ,r-mass)
- ("r-mzid" ,r-mzid)
- ("r-mzr" ,r-mzr)
- ("r-pcamethods" ,r-pcamethods)
- ("r-plyr" ,r-plyr)
- ("r-preprocesscore" ,r-preprocesscore)
- ("r-protgenerics" ,r-protgenerics)
- ("r-rcpp" ,r-rcpp)
- ("r-s4vectors" ,r-s4vectors)
- ("r-scales" ,r-scales)
- ("r-vsn" ,r-vsn)
- ("r-xml" ,r-xml)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/lgatto/MSnbase")
- (synopsis "Base functions and classes for MS-based proteomics")
- (description
- "This package provides basic plotting, data manipulation and processing
-of mass spectrometry based proteomics data.")
- (license license:artistic2.0)))
-
(define-public r-aroma-light
(package
(name "r-aroma-light")
--
2.30.1
- [bug#48575] [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 01/50] gnu: r-genomicalignments: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 03/50] gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 02/50] gnu: r-rtracklayer: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 06/50] gnu: r-msnid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 05/50] gnu: r-bsgenome: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 07/50] gnu: r-msnbase: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 08/50] gnu: r-samr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 09/50] gnu: r-impute: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 11/50] gnu: r-go-db: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 10/50] gnu: r-seqpattern: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 13/50] gnu: r-genomationdata: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 12/50] gnu: r-genomation: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 04/50] gnu: r-topgo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 14/50] gnu: r-pcamethods: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 15/50] gnu: r-mzid: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 16/50] gnu: r-aroma-light: Move to (gnu packages bioconductor)., zimoun, 2021/05/21