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[bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bio
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:25:58 +0200 |
* gnu/packages/bioinformatics.scm (r-genomicfiles): Move from here...
* gnu/packages/bioconductor.scm (r-genomicfiles): ...to here.
---
gnu/packages/bioconductor.scm | 34 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 34 ---------------------------------
2 files changed, 34 insertions(+), 34 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 92eb5a0906..e73e78f616 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2546,6 +2546,40 @@ transcripts, exons, cds and genes. Flexible methods are
provided for
extracting the desired features in a convenient format.")
(license license:artistic2.0)))
+(define-public r-genomicfiles
+ (package
+ (name "r-genomicfiles")
+ (version "1.26.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "GenomicFiles" version))
+ (sha256
+ (base32
+ "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
+ (properties `((upstream-name . "GenomicFiles")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrixgenerics" ,r-matrixgenerics)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-summarizedexperiment" ,r-summarizedexperiment)
+ ("r-variantannotation" ,r-variantannotation)))
+ (home-page "https://bioconductor.org/packages/GenomicFiles")
+ (synopsis "Distributed computing by file or by range")
+ (description
+ "This package provides infrastructure for parallel computations
+distributed by file or by range. User defined mapper and reducer functions
+provide added flexibility for data combination and manipulation.")
+ (license license:artistic2.0)))
+
(define-public r-genomicranges
(package
(name "r-genomicranges")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index acaf41acc4..4836eee82c 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8994,40 +8994,6 @@ their variance is independent of the mean, and they are
usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-genomicfiles
- (package
- (name "r-genomicfiles")
- (version "1.26.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "GenomicFiles" version))
- (sha256
- (base32
- "0awnf0m1pz7cw9wvh9cfxz9k7xm6wnvjm7xbxf139lrhd4nlyqjz"))))
- (properties `((upstream-name . "GenomicFiles")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-biocparallel" ,r-biocparallel)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-matrixgenerics" ,r-matrixgenerics)
- ("r-rsamtools" ,r-rsamtools)
- ("r-rtracklayer" ,r-rtracklayer)
- ("r-s4vectors" ,r-s4vectors)
- ("r-summarizedexperiment" ,r-summarizedexperiment)
- ("r-variantannotation" ,r-variantannotation)))
- (home-page "https://bioconductor.org/packages/GenomicFiles")
- (synopsis "Distributed computing by file or by range")
- (description
- "This package provides infrastructure for parallel computations
-distributed by file or by range. User defined mapper and reducer functions
-provide added flexibility for data combination and manipulation.")
- (license license:artistic2.0)))
-
(define-public r-dirichletmultinomial
(package
(name "r-dirichletmultinomial")
--
2.30.1
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 20/50] gnu: r-annotationhub: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 17/50] gnu: r-deseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 23/50] gnu: r-keggrest: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 24/50] gnu: r-gage: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 22/50] gnu: r-affy: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 21/50] gnu: r-fastseg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 27/50] gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 25/50] gnu: r-complexheatmap: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 30/50] gnu: r-vsn: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 31/50] gnu: r-biovizbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 32/50] gnu: r-ensembldb: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 33/50] gnu: r-mzr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21