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[bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioco
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:21 +0200 |
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
---
gnu/packages/bioconductor.scm | 40 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 40 ---------------------------------
2 files changed, 40 insertions(+), 40 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index eee1561c1b..fe91fd486f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2295,6 +2295,46 @@ provides a highly flexible way to arrange multiple
heatmaps and supports
self-defined annotation graphics.")
(license license:gpl2+)))
+(define-public r-copywriter
+ (package
+ (name "r-copywriter")
+ (version "2.22.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "CopywriteR" version))
+ (sha256
+ (base32
+ "060p6l6l8i6b15hyyz5v5kkxih3h4wcciixii51m9mn82z23xr2f"))))
+ (properties `((upstream-name . "CopywriteR")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-chipseq" ,r-chipseq)
+ ("r-copyhelper" ,r-copyhelper)
+ ("r-data-table" ,r-data-table)
+ ("r-dnacopy" ,r-dnacopy)
+ ("r-futile-logger" ,r-futile-logger)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-gtools" ,r-gtools)
+ ("r-iranges" ,r-iranges)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://github.com/PeeperLab/CopywriteR")
+ (synopsis "Copy number information from targeted sequencing")
+ (description
+ "CopywriteR extracts DNA copy number information from targeted sequencing
+by utilizing off-target reads. It allows for extracting uniformly distributed
+copy number information, can be used without reference, and can be applied to
+sequencing data obtained from various techniques including chromatin
+immunoprecipitation and target enrichment on small gene panels. Thereby,
+CopywriteR constitutes a widely applicable alternative to available copy
+number detection tools.")
+ (license license:gpl2)))
+
(define-public r-deseq
(package
(name "r-deseq")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2acca0c055..79146f915f 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8312,46 +8312,6 @@ analysis, variant tools is project based and provides a
whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
-(define-public r-copywriter
- (package
- (name "r-copywriter")
- (version "2.22.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "CopywriteR" version))
- (sha256
- (base32
- "060p6l6l8i6b15hyyz5v5kkxih3h4wcciixii51m9mn82z23xr2f"))))
- (properties `((upstream-name . "CopywriteR")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocparallel" ,r-biocparallel)
- ("r-chipseq" ,r-chipseq)
- ("r-copyhelper" ,r-copyhelper)
- ("r-data-table" ,r-data-table)
- ("r-dnacopy" ,r-dnacopy)
- ("r-futile-logger" ,r-futile-logger)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicalignments" ,r-genomicalignments)
- ("r-genomicranges" ,r-genomicranges)
- ("r-gtools" ,r-gtools)
- ("r-iranges" ,r-iranges)
- ("r-matrixstats" ,r-matrixstats)
- ("r-rsamtools" ,r-rsamtools)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://github.com/PeeperLab/CopywriteR")
- (synopsis "Copy number information from targeted sequencing")
- (description
- "CopywriteR extracts DNA copy number information from targeted sequencing
-by utilizing off-target reads. It allows for extracting uniformly distributed
-copy number information, can be used without reference, and can be applied to
-sequencing data obtained from various techniques including chromatin
-immunoprecipitation and target enrichment on small gene panels. Thereby,
-CopywriteR constitutes a widely applicable alternative to available copy
-number detection tools.")
- (license license:gpl2)))
-
(define-public r-methylkit
(package
(name "r-methylkit")
--
2.30.1
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 50/50] gnu: r-methylkit: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 39/50] gnu: r-rhtslib: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- bug#48575: [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/05/31