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[bug#59870] [PATCH 09/12] gnu: Add r-gunifrac.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#59870] [PATCH 09/12] gnu: Add r-gunifrac. |
Date: |
Wed, 7 Dec 2022 06:18:34 +0100 |
* gnu/packages/cran.scm (r-gunifrac): New variable.
---
gnu/packages/cran.scm | 44 +++++++++++++++++++++++++++++++++++++++++++
1 file changed, 44 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 415098aed3..646737ea31 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -667,6 +667,50 @@ (define-public r-guix-install
repositories, replacing the need for installation via @code{devtools}.")
(license license:gpl3+)))
+(define-public r-gunifrac
+ (package
+ (name "r-gunifrac")
+ (version "1.7")
+ (source (origin
+ (method url-fetch)
+ (uri (cran-uri "GUniFrac" version))
+ (sha256
+ (base32
+ "13qb5fw9km6p5x8li9x3liqbh833wf2v73npj8jl3msplzfk82vp"))))
+ (properties `((upstream-name . "GUniFrac")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-ape
+ r-dirmult
+ r-foreach
+ r-ggplot2
+ r-ggrepel
+ r-mass
+ r-matrix
+ r-matrixstats
+ r-modeest
+ r-rcpp
+ r-rmutil
+ r-statmod
+ r-vegan))
+ (native-inputs (list r-knitr))
+ (home-page "https://cran.r-project.org/package=GUniFrac")
+ (synopsis
+ "Generalized UniFrac distances and methods for microbiome data analysis")
+ (description
+ "This package provides a suite of methods for powerful and robust
microbiome
+data analysis, including data normalization, data simulation, community-level
+association testing and differential abundance analysis. It implements
generalized
+UniFrac distances, Geometric Mean of Pairwise Ratios (GMPR) normalization,
+semiparametric data simulator, distance-based statistical methods, and feature-
+based statistical methods. The distance-based statistical methods include
three
+extensions of PERMANOVA: (1) PERMANOVA using the Freedman-Lane permutation
scheme,
+(2) PERMANOVA omnibus test using multiple matrices, and (3) analytical approach
+to approximating PERMANOVA p-value. Feature-based statistical methods include
+linear model-based methods for differential abundance analysis of zero-inflated
+high-dimensional compositional data.")
+ (license license:gpl3)))
+
(define-public r-ids
(package
(name "r-ids")
--
2.38.1
- [bug#59870] [PATCH] gnu: Add r-animalcules, r-plotroc, r-gridsvg, r-gunifrac, r-dirmult, r-modeest, r-fbasics, r-timeseries, r-gss, r-stable, r-rmutil, r-statip., address@hidden, 2022/12/07
- [bug#59870] [PATCH 01/12] gnu: Add r-statip., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 03/12] gnu: Add r-stable., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 02/12] gnu: Add r-rmutil., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 04/12] gnu: Add r-gss., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 08/12] gnu: Add r-dirmult., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 10/12] gnu: Add r-gridsvg., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 09/12] gnu: Add r-gunifrac.,
Mădălin Ionel Patrașcu <=
- [bug#59870] [PATCH 12/12] gnu: Add r-animalcules., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 05/12] gnu: Add r-timeseries., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 06/12] gnu: Add r-fbasics., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 11/12] gnu: Add r-plotroc., Mădălin Ionel Patrașcu, 2022/12/07
- [bug#59870] [PATCH 07/12] gnu: Add r-modeest., Mădălin Ionel Patrașcu, 2022/12/07
- bug#59870: [PATCH 01/12] gnu: Add r-statip., Ricardo Wurmus, 2022/12/12