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[bug#60009] Update python-graphviz and other Python updates.

From: Ricardo Wurmus
Subject: [bug#60009] Update python-graphviz and other Python updates.
Date: Mon, 12 Dec 2022 15:22:52 +0100
User-agent: mu4e 1.8.11; emacs 28.2 
This patch series updates some bioinformatics packages.  In doing so it
has to touch python-graphviz, which leads to a large number of rebuilds.

-- 
Ricardo
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