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Re: Conda environments and reproducibility

From: Thibault Lestang
Subject: Re: Conda environments and reproducibility
Date: Fri, 16 Dec 2022 10:16:55 +0000
User-agent: mu4e 1.6.10; emacs 28.1

Simon Tournier <> writes:

> Well, we have not spoken about running something.  We could also write a
> small Python script plotting something using Numpy and/or Scipy and try
> to run the Seurat vignette.
> From my experience, after some months (from 2-3 to 6), Conda will fail.
> Especially after an update of the system (apt upgrade)–and it can worse
> with a ’dist-upgrade’. :-)

Well let's see. I just set up a Gitlab repo with a weekly pipeline (re)creating
a conda env from an environment.yml spec I generated earlier this morning.

Just Python for now but anyone feel free to contribute an R env as well.

-- Thibault

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