Re: Octaviz installation on Mac but first need VTK, and possibly also Cmake

[Henry F. Mollet]

Jonathan,
Getting errors at make stage:
/usr/bin/libtool: internal link edit command failed
make[3]: *** [liboctaviz.dylib] Error 1
make[2]: *** [default_target] Error 2
make[1]: *** [default_target_Common] Error 2
make: *** [default_target] Error 2
Do I ignore and proceed with 'make install'?
Henry

N.B. Complete output after 'g' and then 'make':
[~] -bash-2.05b 519$ cd /Users/hfm/Desktop/octaviz-0.4.0/
[~/Desktop/octaviz-0.4.0] -bash-2.05b 520$ ls
CMakeCCompiler.cmake    CMakeSystem.cmake       Examples
Imaging                 Rendering
CMakeCXXCompiler.cmake  CMakeTmp                Filtering
Makefile                Scripts
CMakeCache.txt          COPYING                 Graphics
Parallel                Testing
CMakeLists.txt          CVS                     Hybrid
Patented                Wrapping
CMakeOutput.log         Common                  IO
README                  cmake.check_cache

[~/Desktop/octaviz-0.4.0] -bash-2.05b 521$ make
Building dependencies. cmake.depends...
-- Loading VTK CMake commands
-- Loading VTK CMake commands - done
cmake.depends is up-to-date
/Users/hfm/Desktop/octaviz-0.4.0/Wrapping: building default_target
Building dependencies. cmake.depends...
Building object file vtkWrapOctave.o...
Building object file vtkParse.tab.o...
Building executable
/Users/hfm/Desktop/octaviz-0.4.0/Wrapping/vtkWrapOctave...
/Users/hfm/Desktop/octaviz-0.4.0/Common: building default_target
Building dependencies. cmake.depends...
Building object file octaviz.o...
Building shared library liboctaviz.dylib...
ld: warning multiple definitions of symbol _xerbla_
/usr/local/lib/octave-2.1.71/liboctinterp.dylib(single module) definition of
_xerbla_
/usr/local/lib/octave-2.1.71/libcruft.dylib(single module) definition of
_xerbla_
ld: octaviz.o illegal reference for -dynamic code (section difference
reference from section (__TEXT,__eh_frame) relocation entry (12) to symbol:
__ZN6Array2IdED0Ev defined in dylib:
/usr/local/lib/octave-2.1.71/liboctave.dylib)
ld: octaviz.o illegal reference for -dynamic code (section difference
reference from section (__TEXT,__eh_frame) relocation entry (16) to symbol:
__ZN6Array2IdED1Ev defined in dylib:
/usr/local/lib/octave-2.1.71/liboctave.dylib)
ld: octaviz.o illegal reference for -dynamic code (section difference
reference from section (__TEXT,__eh_frame) relocation entry (124) to symbol:
__ZN5ArrayISsEaSERKS0_ defined in dylib:
/usr/local/lib/octave-2.1.71/liboctave.dylib)
/usr/bin/libtool: internal link edit command failed
make[3]: *** [liboctaviz.dylib] Error 1
make[2]: *** [default_target] Error 2
make[1]: *** [default_target_Common] Error 2
make: *** [default_target] Error 2
[~/Desktop/octaviz-0.4.0] -bash-2.05b 522$
*********************************************


on 10/9/05 8:36 PM, Jonathan Stickel at address@hidden wrote:

> Henry
> 
> OK, this looks better now.  The 'g' option doesn't appear until you
> press 'c'.
> 
> Jonathan
> 
> 
> Henry F. Mollet wrote:
>> Jonathan and Marius,
>> That's what I tried following
>>  1. Run ccmake in the directory where you want the object and executable
>> files to be placed (build directory). If the source directory is not
>>  the same as this build directory, you have to specify it as an argument on
>> the command line.
>> But was getting nowhere with lot's of errors.
>> 
>> Now, following your directions and running ccmake from within the sources
>> directory I made progress:
>> 
>> CMAKE_BUILD_TYPE                *
>>  CMAKE_INSTALL_PREFIX            */usr/local
>>  CXX_COMPILER_PCH                *g++-3.4
>>  EXECUTABLE_OUTPUT_PATH          *
>>  LIBRARY_OUTPUT_PATH             *
>>  OCTAVE_CONFIG                   */usr/local/bin/octave-config
>>  USE_PREC_HEADERS                *OFF
>>  VTK_DIR                         */sw/lib/vtk
>>  CMAKE_BACKWARDS_COMPATIBILITY    1.8
>>  
>>  
>> CMAKE_BUILD_TYPE: Choose the type of build, options are:
>> None(CMAKE_CXX_FLAGS or CMAKE_C_FLAGS used) Debug Release RelWithDebInfo
>> MinSizeRel.    
>> Press [enter] to edit option
>> CMake Version 1.8 - patch 3
>> Press [c] to configure
>> Press [h] for help         Press [q] to quit without generating
>> Press [t] to toggle advanced mode (Currently Off)
>> 
>> So this looks good as far as I can tell and the next step would be to press
>> 'g' but there is *no* g option. I tried it anyway but nothing happened. I
>> was not in Edit mode because h produced the help screen.  So I used toggle
>> to check advance mode and got:
>> 
> <snip>
>> 
>> 
>> on 10/9/05 4:33 PM, Jonathan Stickel at address@hidden wrote:
>> 
>> 
>>> Henry
>>> 
>>> Basically, "ccmake ." (or "cmake .") is equivalent to "./configure
>>> [options]".  Instead of autogen tools, cmake tools are used.
>>> 
>>> What is your trouble with "ccmake ." exactly?  Just change your
>>> directory in your shell to wherever you expanded the Octaviz source.
>>> Then run
>>> 
>>> $ ccmake .
>>> 
>>> You should get a ascii text menu that displays various options, among
>>> them the directory where vtk libs are detected (e.g. /usr/local/lib/vtk)
>>> and the install parent directory (e.g. /usr).  Press 'c' to configure
>>> and 'g' to generate.  If there are problems (e.g vtk libs can't be
>>> found), then you will get errors.  If you get errors, let us know what
>>> they are and maybe we can help.
>>> 
>>> Jonathan
>>> 
>>> P.S.  There is a "octaviz-help" list, but only 2 people are currently
>>> subscribed (Henry and myself).  This thread is on the octave help list
>>> so that Henry can get Macintosh specific help, which I don't know much
>>> about.
>>> 
>>> 
>>> Henry F. Mollet wrote:
>>> 
>>>> Marius,
>>>> No configure script:
>>>> [~] -bash-2.05b 507$ cd /Users/hfm/Desktop/octaviz-0.4.0/
>>>> [~/Desktop/octaviz-0.4.0] -bash-2.05b 508$ ./configure --help|less
>>>> -bash: ./configure: No such file or directory
>>>> [~/Desktop/octaviz-0.4.0] -bash-2.05b 509$ ls
>>>> CMakeLists.txt  CVS             Examples        Graphics        IO
>>>> Parallel        README          Scripts         Wrapping
>>>> COPYING         Common          Filtering       Hybrid          Imaging
>>>> Patented        Rendering       Testing
>>>> 
>>>> According to Octaviz website instructions for installation are:
>>>> Octaviz has been developed for Linux with X-Window System and OpenGL but it
>>>> should work on any platform that supports X and VTK. Octaviz should work
>>>> under CygWin too but this port requires more testing. Any feedback
>>>> regarding
>>>> Octaviz in CygWin is welcome.
>>>> 
>>>> You'll need octave 2.1.53 or later and VTK CVS to build octaviz. To compile
>>>> octaviz, run "ccmake ." in the root directory of the source tree, then
>>>> "make" and finally "make install".
>>>> 
>>>> To build octaviz under CygWin:
>>>> CUT, more complicated.
>>>> 
>>>> I got stuck at run "ccmake ."
>>>> Henry
>>>> 
>>>> 
>>>> on 10/9/05 12:18 PM, Marius Schamschula at address@hidden wrote:
>>>> 
>>>> 
>>>> 
>>>>> Henry,
>>>>> 
>>>>> Does octaviz have a configure script? If so, cd into the untared
>>>>> directory and run
>>>>> 
>>>>> ./configure --help|less
>>>>> 
>>>>> to see what variables and options can be set. You can either set the
>>>>> environmental variables ahead of time, i.e. under bash something like
>>>>> 
>>>>> CPPFLAGS=-I/some/strange/place/include
>>>>> esport CPPFLAGS
>>>>> 
>>>>> or when running configure, something like
>>>>> 
>>>>> ./configure CPPFLAGS=-I/some/strange/place/include
>>>>> 
>>>>> Note however: the second variant generally fails if any variable has
>>>>> more than one argument.
>>>>> 
>>>>> On Oct 9, 2005, at 1:23 PM, Henry F. Mollet wrote:
>>>>> 
>>>>> 
>>>>> 
>>>>>> Marius,
>>>>>> Thanks, but I don't think that I had a choice about where Fink is
>>>>>> putting
>>>>>> things or I would have installed Cmake and VTK in /usr/local/bin  where
>>>>>> octave-2.1.71 is located (instead of in /sw/bin). Using Fink I was
>>>>>> able to
>>>>>> install VTK quickly to find out what is was all about.
>>>>>> 
>>>>>> Where is the 'fooling around' to be done?
>>>>>> I.e. with
>>>>>> CPPFLAGS=-I/some/strange/place/include \ and
>>>>>> and
>>>>>> LDFLAGS=-L/some/strange/place/lib
>>>>>> (above copied from a google search for 'LDFLAGS' to find out what it
>>>>>> is.)
>>>>>> 
>>>>>> I have checked the CMakeLists.txt file in the untared octaviz-0.4.0
>>>>>> directory but could not find LDFLAGS nor CPPFLAGS. I surmise it may be
>>>>>> way
>>>>>> over my head to accomplish something that passes information to the
>>>>>> assembler and linker during the build process.
>>>>>> Henry
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> on 10/8/05 1:24 PM, Marius Schamschula at address@hidden
>>>>>> wrote:
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>>> Henry,
>>>>>>> 
>>>>>>> Using finK, or for that DarwinPorts, cause your packages to be
>>>>>>> installed outside of the normal search path (i.e. /sw for fink and
>>>>>>> /opt/local for DP). There is a reason why I generally build things
>>>>>>> into
>>>>>>> /usr/local...
>>>>>>> 
>>>>>>> You'll have to fool around with LDFLAGS and CPPFLAGS to point things
>>>>>>> into the right direction.
>>>>>>> 
>>>>>>> On Oct 8, 2005, at 3:03 PM, Henry F. Mollet wrote:
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>>> I checked SourceForge.net Project: octaviz and found nothing re
>>>>>>>> octaviz
>>>>>>>> installation on Mac. Hopefully I'll get a hint here what I should try
>>>>>>>> next.
>>>>>>>> 
>>>>>>>> Jonathan was correct: I was able to use Fink to install CMake1.8.3-1
>>>>>>>> and
>>>>>>>> VTK-py23 4.4.0-5. Many examples/demos are working using:
>>>>>>>> "vtk -f filename" or
>>>>>>>> "python -i filename" at the shell prompt.
>>>>>>>> So far so good.
>>>>>>>> 
>>>>>>>> Now I tried to install octaviz-0.4.0 from source and it failed (see
>>>>>>>> below)
>>>>>>>> I've also tried to install in /usr/local/bin but it also failed
>>>>>>>> (errors not
>>>>>>>> included).
>>>>>>>> Henry
>>>>>>>> 
>>>>>>>> [/sw/bin] -bash-2.05b 523$ ccmake /users/hfm/Desktop/octaviz-0.4.0
>>>>>>>> 
>>>>>>>> CMake Error: Error in cmake code at
>>>>>>>> /sw/share/CMake/Modules/CMakeDetermineSystem.cmake:71:
>>>>>>>> FILE Internal CMake error when trying to open file:
>>>>>>>> /sw/bin/CMakeOutput.log
>>>>>>>> for writting.
>>>>>>>> 
>>>>>>>> CMake Error: Could not open file for write in copy operatation
>>>>>>>> /sw/bin/CMakeSystem.cmake.tmp
>>>>>>>> 
>>>>>>>> CMake Error: Error in cmake code at
>>>>>>>> /sw/share/CMake/Modules/CMakeDetermineCCompiler.cmake:54:
>>>>>>>> FILE Internal CMake error when trying to open file:
>>>>>>>> /sw/bin/CMakeOutput.log
>>>>>>>> for writting.
>>>>>>>> 
>>>>>>>> CMake Error: Could not open file for write in copy operatation
>>>>>>>> /sw/bin/CMakeCCompiler.cmake.tmp
>>>>>>>> 
>>>>>>>> CMake Error: Error in cmake code at
>>>>>>>> /sw/share/CMake/Modules/CMakeDetermineCXXCompiler.cmake:47:
>>>>>>>> FILE Internal CMake error when trying to open file:
>>>>>>>> /sw/bin/CMakeOutput.log
>>>>>>>> for writting.
>>>>>>>> 
>>>>>>>> CMake Error: Could not open file for write in copy operatation
>>>>>>>> /sw/bin/CMakeCXXCompiler.cmake.tmp
>>>>>>>> 
>>>>>>>> CMake Error: Error in cmake code at
>>>>>>>> /sw/share/CMake/Modules/CMakeTestCCompiler.cmake:8:
>>>>>>>> FILE Internal CMake error when trying to open file:
>>>>>>>> /sw/bin/CMakeTmp/testCCompiler.c for writting.
>>>>>>>> 
>>>>>>>> CMake Error: Failed to create CMakeList file for
>>>>>>>> /sw/bin/CMakeTmp/CMakeLists.txt
>>>>>>>> 
>>>>>>>> CMake Error: Error in cmake code at
>>>>>>>> /sw/share/CMake/Modules/CMakeTestCCompiler.cmake:16:
>>>>>>>> FILE Internal CMake error when trying to open file:
>>>>>>>> /sw/bin/CMakeError.log
>>>>>>>> for writting.
>>>>>>>> 
>>>>>>>> The C compiler "gcc" is not able to compile a simple test program.
>>>>>>>> It fails with the following output:
>>>>>>>> 
>>>>>>>> 
>>>>>>>> CMake will not be able to correctly generate this project.
>>>>>>>> 
>>>>>>>> CMake Error: Unable to open cache file for save.
>>>>>>>> /sw/bin/CMakeCache.txt
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>> on 10/4/05 9:20 PM, Jonathan Stickel at address@hidden
>>>>>>>> wrote:
>>>>>>>> 
>>>>>>>> 
>>>>>>>> 
>>>>>>>>> Henry
>>>>>>>>> 
>>>>>>>>> I do not work on a Mac, and so my help will be limited.  I am also
>>>>>>>>> the
>>>>>>>>> only other subscriber to the octaviz list at the moment!  You might
>>>>>>>>> also
>>>>>>>>> try the octaviz web forums (in the sourceforge site).
>>>>>>>>> 
>>>>>>>>> I haven't tried anonymous cvs checkout in awhile, but it should work
>>>>>>>>> according to the sourceforge instructions.  You could also try the
>>>>>>>>> last
>>>>>>>>> release, octaviz-0.4.  This you can download directly as a tarball.
>>>>>>>>> 
>>>>>>>>> You will definitely need cmake and vtk (>vtk-4.4) to compile
>>>>>>>>> octaviz.
>>>>>>>>> I
>>>>>>>>> do not know if you can get these through fink or not.  If not,
>>>>>>>>> install
>>>>>>>>> them from source from the vtk website (vtk.org).
>>>>>>>>> 
>>>>>>>>> HTH,
>>>>>>>>> Jonathan
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>> Henry F. Mollet wrote:
>>>>>>>>> 
>>>>>>>>> 
>>>>>>>>>>> From Octaviz website at
>>>>>>>>>>> http://octaviz.sourceforge.net/index.php?page=build
>>>>>>>>>> 
>>>>>>>>>> You'll need octave 2.1.53 or later and VTK CVS to build octaviz. To
>>>>>>>>>> compile
>>>>>>>>>> octaviz, run "ccmake ." in the root directory of the source tree,
>>>>>>>>>> then
>>>>>>>>>> "make" and finally "make install".
>>>>>>>>>> 
>>>>>>>>>> [/Develop] -bash-2.05b 533$ cvs -d
>>>>>>>>>> :pserver:address@hidden:/cvsroot/VTK login
>>>>>>>>>> Logging in to
>>>>>>>>>> :pserver:address@hidden:2401/cvsroot/VTK
>>>>>>>>>> CVS password:
>>>>>>>>>> PAM authenticate error: User not known to the underlying
>>>>>>>>>> authentication
>>>>>>>>>> module
>>>>>>>>>> cvs login: authorization failed: server public.kitware.com rejected
>>>>>>>>>> access
>>>>>>>>>> to /cvsroot/VTK for user anonymous
>>>>>>>>>> 
>>>>>>>>>> Password is supposed to be VTK but it does not work. I need help
>>>>>>>>>> from
>>>>>>>>>> somebody who installed octaviz on Mac OS 10.4.2.
>>>>>>>>>> 
>>>>>>>>>> Also, it it not potentially problematic to create a directory
>>>>>>>>>> "/Develop"
>>>>>>>>>> when I already have a directory "/Developer"?
>>>>>>>>>> 
>>>>>>>>>> Also, VTK requires Cmake. I'm not sure if I have it.
>>>>>>>>>> [/Develop] -bash-2.05b 534$ locate CMake
>>>>>>>>>> [/Develop] -bash-2.05b 535$ locate cmake
>>>>>>>>>> /sw/fink/10.4-transitional/stable/main/finkinfo/devel/cmake.info
>>>>>>>>>> /sw/fink/10.4-transitional/stable/main/finkinfo/devel/cmake.patch
>>>>>>>>>> /sw/fink/10.4-transitional/unstable/main/finkinfo/devel/cmake.info
>>>>>>>>>> /sw/fink/10.4-transitional/unstable/main/finkinfo/devel/cmake.patch
>>>>>>>>>> /usr/X11R6/bin/ccmakedep
>>>>>>>>>> /usr/X11R6/bin/gccmakedep
>>>>>>>>>> /usr/X11R6/lib/X11/doc/html/ccmakedep.1.html
>>>>>>>>>> /usr/X11R6/lib/X11/doc/html/gccmakedep.1.html
>>>>>>>>>> /usr/X11R6/man/man1/ccmakedep.1
>>>>>>>>>> /usr/X11R6/man/man1/gccmakedep.1
>>>>>>>>>> [/Develop] -bash-2.05b 536$
>>>>>>>>>> 
>>>>>>>>>> Can somebody please help.
>>>>>>>>>> Henry
>>>>>>>>>> 
>>>>>>> 
>>>>>>> Marius
>>>>>>> --
>>>>>>> Marius Schamschula,  Alabama A & M University, Department of Physics
>>>>>>> 
>>>>>>>    The Center for Hydrology Soil Climatology and Remote Sensing
>>>>>>>   http://optics.physics.aamu.edu/ - http://www.physics.aamu.edu/
>>>>>>>          http://wx.aamu.edu/ - http://www.aamu.edu/hscars/
>>>>>>> 
>>>>>>> 
>>>>>>> 
>>>>>>> -------------------------------------------------------------
>>>>>>> Octave is freely available under the terms of the GNU GPL.
>>>>>>> 
>>>>>>> Octave's home on the web:  http://www.octave.org
>>>>>>> How to fund new projects:  http://www.octave.org/funding.html
>>>>>>> Subscription information:  http://www.octave.org/archive.html
>>>>>>> -------------------------------------------------------------
>>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> 
>>>>>> -------------------------------------------------------------
>>>>>> Octave is freely available under the terms of the GNU GPL.
>>>>>> 
>>>>>> Octave's home on the web:  http://www.octave.org
>>>>>> How to fund new projects:  http://www.octave.org/funding.html
>>>>>> Subscription information:  http://www.octave.org/archive.html
>>>>>> -------------------------------------------------------------
>>>>>> 
>>>>>> 
>>>>> 
>>>>> Marius
>>>>> --
>>>>> Marius Schamschula                               Webmaster
>>>>> 
>>>>>        The Huntsville Macintosh Users Group
>>>>>                    www.hmug.org
>>>>> 
>>>>> webmaster at hmug dot org    marius at schamschula dot com
>>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>> 
>>> 
>>> -------------------------------------------------------------
>>> Octave is freely available under the terms of the GNU GPL.
>>> 
>>> Octave's home on the web:  http://www.octave.org
>>> How to fund new projects:  http://www.octave.org/funding.html
>>> Subscription information:  http://www.octave.org/archive.html
>>> -------------------------------------------------------------
>>> 
>> 
>> 
>> 
>> 
> 
> 
> 
> -------------------------------------------------------------
> Octave is freely available under the terms of the GNU GPL.
> 
> Octave's home on the web:  http://www.octave.org
> How to fund new projects:  http://www.octave.org/funding.html
> Subscription information:  http://www.octave.org/archive.html
> -------------------------------------------------------------
> 




-------------------------------------------------------------
Octave is freely available under the terms of the GNU GPL.

Octave's home on the web:  http://www.octave.org
How to fund new projects:  http://www.octave.org/funding.html
Subscription information:  http://www.octave.org/archive.html
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