[igraph] network neighborhood

[anupam sinha]

Hi Gabor,
                  The subgraphs obtained when I run the code are different from what I obtain when I run graph.neighborhood on individual nodes manually. For example :
With the code for third node :                                                                                                                 Manually for third node :

ENST00000304808 ENST00000228306                                                                                                 [[1]]
                                                                                                                                                                        Vertices: 8
                                                                                                                                                                        Edges: 7
                                                                                                                                                                        Directed: FALSE
                                                                                                                                                                         Edges:
                                         
                                                                                                                                                                    [0] 'ENST00000260600' -- 'ENST00000305762'
                                                                                                                                                                      [1] 'ENST00000305762' --'ENST00000360472'
                                                                                                                                                                      [2] 'ENST00000305762' --'ENST00000262053'
                                                                                                                                                                      [3] 'ENST00000305762' --'ENST00000327367'
                                                                                                                                                                      [4] 'ENST00000305762' --'ENST00000361099'
                                                                                                                                                                     [5] 'ENST00000305762' -- 'ENST00000356978'
                                                                                                                                                                     [6] 'ENST00000305762' -- 'ENST00000252699'
Attached herewith is the file on which I did these operations. Also attached is the code file.Where am I going wrong ? Thanks in advance

Regards,

Anupam

network_neighbourhood.R
Description: Binary data

blood_el_ENST_mod.txt.zip
Description: Zip archive