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Re: [igraph] making random graphs from matrices

From: Tamas Nepusz
Subject: Re: [igraph] making random graphs from matrices
Date: Thu, 23 Feb 2012 12:58:29 +0100
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:9.0) Gecko/20111229 Thunderbird/9.0

Dear Robin,

Assuming that your square matrix of probabilities is given in a matrix p,
you can do this:

> p <- matrix(c(0,0.5,0.5,0.5, 0.5,0,0.5,0.5, 0,0,0,0, 1,0,1,0), nrow=4)
> r <- matrix(runif(nrow(p)*ncol(p)), nrow=nrow(p))
> g <- graph.adjacency(r < p, mode="undirected")


On 02/23/2012 11:40 AM, Robin Cowan wrote:
> Dear List,
> Is there a simple way of taking a square (symmetric) matrix of reals  
> and generating a random graph of fixed density using that matrix as  
> the (relative) probability of a particular link forming.
> I am using igraph inside R.
> It seems one way to do that would be with a two-dimensional version  
> of the sample() statement, to create an adjacency matrix, but I can't  
> find documentation on that.
> It also seems related to igraph's preference.game() but I can't see a  
> way there to control density
> Thanks for your help.
> Robin Cowan
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