[Octave-bug-tracker] [bug #45406] netcdf package install fails

[anonymous]

URL:
  <http://savannah.gnu.org/bugs/?45406>

                 Summary: netcdf package install fails
                 Project: GNU Octave
            Submitted by: None
            Submitted on: Thu 25 Jun 2015 12:36:41 PM UTC
                Category: Octave Forge Package
                Severity: 3 - Normal
                Priority: 5 - Normal
              Item Group: Build Failure
                  Status: None
             Assigned to: None
         Originator Name: Greg King
        Originator Email: address@hidden
             Open/Closed: Open
         Discussion Lock: Any
                 Release: 3.8.2
        Operating System: Mac OS

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Details:

I just installed octave on mac osx Yosemite, using homebrew.

Octave install was okay. The version homebrew installed was 3.8.2.

I then tried to install the netcdf package from the octave gui. That failed. 
The output is below.

What to do??

greg king

pkg install -forge netcdf
warning: creating installation directory /Users/gking/octave
In file included from __netcdf__.cc:17:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/../octave/oct.h:36:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/defun-dld.h:30:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/defun-int.h:28:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov-builtin.h:28:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov-fcn.h:32:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/oct-obj.h:34:
In file included from
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/ov.h:42:
/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/oct-hdf5.h:27:10:
fatal error: 'hdf5.h' file
      not found
#include <hdf5.h>
         ^
1 error generated.
make: *** [__netcdf__.oct] Error 1
/usr/local/Cellar/octave/3.8.2_1/bin/mkoctfile-3.8.2 -DHAVE_OCTAVE_ -v
-I/usr/local/Cellar/netcdf/4.3.3.1/include __netcdf__.cc
-L/usr/local/Cellar/netcdf/4.3.3.1/lib -lnetcdf
clang++ -c  -fPIC
-I/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave/..
-I/usr/local/Cellar/octave/3.8.2_1/include/octave-3.8.2/octave
-I/usr/local/Cellar/octave/3.8.2_1/include 
-I/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/include
-I/Library/Java/JavaVirtualMachines/jdk1.8.0_40.jdk/Contents/Home/include/darwin
-D_REENTRANT -D_THREAD_SAFE -pthread  
-I/usr/local/Cellar/netcdf/4.3.3.1/include  -DHAVE_OCTAVE_ __netcdf__.cc -o
__netcdf__.o

pkg: error running `make' for the netcdf package.
error: called from 'configure_make' in file
/usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/private/configure_make.m
near line 82, column 9
error: called from:
error:  
/usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/private/install.m at
line 199, column 5
error:   /usr/local/Cellar/octave/3.8.2_1/share/octave/3.8.2/m/pkg/pkg.m at
line 394, column 9
>>




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