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use of parallel in bash script


From: Dietmar Pils
Subject: use of parallel in bash script
Date: Thu, 06 Dec 2012 21:04:30 +0100
User-agent: Mozilla/5.0 (Windows NT 6.1; WOW64; rv:16.0) Gecko/20121026 Thunderbird/16.0.2

dear developer or maintainer of GNU parallel,

how can I use parallel in a bash script? what do I miss, but the snippet

time cat RUM.sam | parallel --pipe --files -N 5184953 sort -k 3,3 -k 4,4n | parallel -mj1 sort -k 3,3 -k 4,4n -m {} ";" rm {} > sort.sam

works from the command lane but not in a bash script.

what have I to do, that I can run the same from inside a bash script...


best wishes

dietmar





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