Re: parallel + blast + LSF

[Martin d'Anjou]

Hi,

Just want to say thanks for all the advice. I am exploring more ways of doing things now. I can't do without LSF, and I want to leverage GNU parallel as much as I can rather than writing my own scripts.

There are limits to what each tool can do, so in the end I'll have to marry them, I just have to find the right mix.

Martin

On 15-04-15 04:32 PM, George Marselis wrote:

> You could use parallel to submit jobs, but its a very bad idea, due to the limitations of the software. 

and by that, I mean the limitations of the LSF software. 

Parallel rocks. Ole rocks. 

Next Parallel Release should be named "GNU Terry Pratchett"

> Let me know which option is better for you.

> As with regard to Martin, he should not use parallel for 

^-- this is your brain on Perl. 

Best Regards,

George