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Re: GNU parallel: bug found message


From: Hans Schou
Subject: Re: GNU parallel: bug found message
Date: Sat, 19 Jan 2019 09:21:38 +0100


On Fri, Jan 18, 2019 at 3:33 PM <address@hidden> wrote:
parallel: This should not happen. You have found a bug.
Please contact <address@hidden> and include:
* The version number: 20170322

You have to upgrade to latest version 20181222 before reporting a bug.
 
* The bugid: host check too many col0: thalamus_nfs     mkdir: cannot create directory '/projects/freesurfer': Permission denied

You are probably running the command as a user which does not have the right access.
Try make a directory in say /tmp/foo and look at this to see who the owner is:
   ls -ld /tmp/foo
 
[...]$ echo $FREESURFER_PATH $SUBJECTS_DIR
/projects/freesurfer /projects/freesurfer/subjects

put this echo line in your script ending with: > /tmp/checkvar
then check the file to see if is correct.

./hans

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