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From: | Rob Sargent |
Subject: | GNU Parallel Bug Reports trouble with space after filename substitution |
Date: | Mon, 05 Jan 2015 11:59:01 -0700 |
User-agent: | Mozilla/5.0 (X11; Linux x86_64; rv:31.0) Gecko/20100101 Thunderbird/31.3.0 |
I'm
getting a space immediately following the {//} substitution,
when I would like to add a filename to the dirname from input. Since I'm not sure how you're displaying this email, please note there is a space character preceding the "./peakdector"s. So maybe I'm getting a space and a dot I don't want? Any help appreciated, rjs parallel --version GNU parallel 20141122 Copyright (C) 2007,2008,2009,2010,2011,2012,2013,2014 Ole Tange and Free Software Foundation, Inc. License GPLv3+: GNU GPL version 3 or later <http://gnu.org/licenses/gpl.html> This is free software: you are free to change and redistribute it. GNU parallel comes with no warranty. parallel --verbose --joblog ba.ll --jobs 6 java -cp . BillAuer {1} 9 {2} " > {//}/peakdector.{2}" :::: pvalFilelist ::: 15 20 25 30 35 40 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 15 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.15 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 20 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.20 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 25 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.25 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 30 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.30 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 35 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.35 java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02/cumulative.pval 9 40 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02 ./peakdector.40 /bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 15 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.15 /bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 20 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.20 /bin/bash: /raid3/TITP/CLL/sgs/dist/ped6228/chr7/d02: Is a directory java -cp . BillAuer /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1/cumulative.pval 9 25 > /raid3/TITP/CLL/sgs/dist/ped6228/chr7/para1 ./peakdector.25 |
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