bug#56266: closed ([PATCH] gnu: Add r-bader.)

[GNU bug Tracking System]

Your message dated Thu, 27 Oct 2022 15:45:32 +0200
with message-id <87mt9hgz1t.fsf@elephly.net>
and subject line [PATCH] gnu: Add r-bader.
has caused the debbugs.gnu.org bug report #56266,
regarding [PATCH] gnu: Add r-bader.
to be marked as done.

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-- 
56266: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=56266
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-bader.
>
>
>
>
> Date: 
>
> Mon, 27 Jun 2022 23:28:24 +0200
>
>
>
>
> * gnu/packages/bioconductor.scm (r-bader): New variable.
> ---
>  gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
>  1 file changed, 24 insertions(+)
>
> diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
> index 1e87b190c2..6d65cc1c1f 100644
> --- a/gnu/packages/bioconductor.scm
> +++ b/gnu/packages/bioconductor.scm
> @@ -2029,6 +2029,30 @@ (define-public r-aneufinder
>  sequencing data.")
>      (license license:artistic2.0)))
>  
> +(define-public r-bader
> +  (package
> +    (name "r-bader")
> +    (version "1.34.0")
> +    (source (origin
> +              (method url-fetch)
> +              (uri (bioconductor-uri "BADER" version))
> +              (sha256
> +               (base32
> +                "0i5x1r2ns1hxhqk5jyfqird81hck1hllvvgx5bn0rb5vl99g8spm"))))
> +    (properties `((upstream-name . "BADER")))
> +    (build-system r-build-system)
> +    (home-page "https://bioconductor.org/packages/BADER";)
> +    (synopsis
> +     "Bayesian analysis of differential expression in RNA sequencing data")
> +    (description
> +     "The @code{BADER} package is intended for the analysis of RNA sequencing
> +data.  The algorithm fits a Bayesian hierarchical model for RNA sequencing 
> count
> +data.  @code{BADER} returns the posterior probability of differential 
> expression
> +for each gene between two groups A and B.  The joint posterior distribution of
> +the variables in the model can be returned in the form of posterior samples,
> +which can be used for further down-stream analyses such as gene set 
> enrichment.")
> +    (license license:gpl2)))
> +
>  (define-public r-biocversion
>    (package
>      (name "r-biocversion")
>
> base-commit: 144a750f8b10e606751bc887bcb09e7fb7ae09ff
> -- 
> 2.36.1
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: Add r-bader.
>
>
>
>
> Date: 
>
> Thu, 27 Oct 2022 15:45:32 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.9; emacs 28.1
>
>
>
>
> Applied with minor changes, thank you!
>
> -- 
> Ricardo
>
>
> --- End Message ---