Dear all,
according to the userguide initializing a H5MD file works as
follows:
from espressomd import h5md
system = espressomd.system()
h5 = h5md.h5md("File.h5",system)
However, the module "h5md" is not found by the pypresso
interpreter. It is also stated that the sample script
"h5md_WriteFile.py" shows the usage of H5MD files. However, that
sample file does not exist.
According to a different sample script called "h5md.py", H5MD
format can be used like this:
from espressomd.io.writer import h5md
h5_file = h5md.H5md(filename="sample.h5", write_pos=True,
write_vel=True, ... )
h5_file.write()
This works, but it is not stated anywhere how to read from the
H5MD file. In particular, I want to load the particle coordinates
to visualize some snapshots of my system's trajectory.
Does anyone know how to do that? Or can anyone point me towards
literature, how to use the H5MD format properly in espresso?
Many thanks and best regards,
Clemens