# rename "io" submodule
git apply io.patch
mv src/python/espressomd/io src/python/espressomd/io_
# run cmake
mkdir build-patched
cd build-patched
cmake .. -DIPYTHON_EXECUTABLE=/home/shawn/soft/python3/bin/ipython3 -DCYTHON_EXECUTABLE=/home/shawn/soft/python3/bin/cython -DPYTHON_EXECUTABLE=/home/shawn/soft/python3/bin/python3 -DCMAKE_INSTALL_PREFIX=/home/shawn/soft/Espresso_p3 -DFFTW3_LIBRARIES=/home/shawn/soft/fftw/lib/libfftw3.a -DFFTW3_INCLUDE_DIR=/home/shawn/soft/fftw/include -DBOOST_ROOT=/home/shawn/soft/boost_1_70_0/ -DBoost_DIR=/home/shawn/sourcecode/boost_1_70_0 -DBOOST_LIBRARYDIR=/home/shawn/soft/boost_1_70_0/lib
# stop this bash script if any command returns a non-zero code
set -e
# compile espresso
make -j$(nproc)
# rename "io" submodule back to normal
mv src/python/espressomd/io_ src/python/espressomd/io
# run the tests
make -j$(nproc) check_python
echo "build was successful and the tests passed"
# restore source folder
cd ..
mv src/python/espressomd/io_ src/python/espressomd/io
git apply -R io.patch