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packaging python-cyvcf2
From: |
Alexis Simon |
Subject: |
packaging python-cyvcf2 |
Date: |
Thu, 21 Mar 2024 18:03:31 -0700 |
User-agent: |
Mozilla Thunderbird |
Hi, I've spent nearly the day on this and it's driving me crazy.
I am trying to package this cyvcf2 [1]
I am attaching the packaging I've tried.
The build is failing with this error:
running build_ext
# cyvcf2: htslib mode is BUILTIN
# cyvcf2: htslib configure options is None
error: [Errno 2] No such file or directory: './configure'
error: in phase 'build': uncaught exception:
%exception #<&invoke-error program: "python" arguments: ("./setup.py"
"build") exit-status: 1 term-signal: #f stop-signal: #f>
What is very disturbing is that it builds fine in a debugging
environment following the documentation [2]
The .configure file is present in the failed build, so there must be
something going on with the setup.py not managing to change directory to
htslib in the build_htslib function.
If anyone has any guidelines to debug this further it would be much
appreciated.
Thanks,
Alexis
[1] https://github.com/brentp/cyvcf2/
[2] https://guix.gnu.org/manual/en/guix.html#Debugging-Build-Failures
cyvcf2.scm
Description: Text Data
- packaging python-cyvcf2,
Alexis Simon <=