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Unable to run host commands with singularity in a `guix pack -f squashfs
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From: |
Sebastian Gibb |
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Subject: |
Unable to run host commands with singularity in a `guix pack -f squashfs` conainer |
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Date: |
Thu, 15 Jul 2021 19:39:48 +0000 (UTC) |
Hi,
> The HPC uses Cent OS 8.1. It offers slurm 20.02.5 for job scheduling and
> singularity 3.4.2 for virtualisation/own software bundles.
> ...
> I could workaround the `ssh` problem by putting `openssh-sans-x` into the
> `guix pack` command and binding `/etc/group`, `/etc/passwd` and `/var/run`
> to my singularity container. But if I include `slurm` I always got an error
> for `sinfo`/`sbatch`:
> "slurm_partitions: Zero Bytes were transmitted or received"
> (maybe I need to bind some more pathes to singularity?)
I got it working by putting a slurm with the same major.minor version into the
singularity container.
Best wishes,
Sebastian