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From: | Vestergaard, Gisle Alberg |
Subject: | Something broke from 20140622 to 20140822 |
Date: | Tue, 23 Sep 2014 12:53:36 +0200 |
Hi This works (parallel version 20140622): This does not with (parallel-20140822) cat 10000_illumina_reads.trimmed_and_processed.sortbylength.fa | ~/bin/Programs/parallel-20140822/src/parallel --block 100k --recstart '>' --pipe "cat > {#}; usearch -cluster_fast {#} -id 0.9 -centroids {#}.out; cat {#}.out
>> tyt2; rm {#} {#}.out" This does also not work with (parallel-20140822) ~/bin/Programs/parallel-20140822/src/parallel --pipepart -a 10000_illumina_reads.trimmed_and_processed.sortbylength.fa --block 100k --recstart '>' --cat "usearch -cluster_fast {} -id 0.9 -centroids {#}.out; tail -n +7
{#}.out; rm {#}.out" Please advice Gisle Vestergaard Helmholtz Zentrum München Deutsches Forschungszentrum für Gesundheit und Umwelt (GmbH) Ingolstädter Landstr. 1 85764 Neuherberg www.helmholtz-muenchen.de Aufsichtsratsvorsitzende: MinDir´in Bärbel Brumme-Bothe Geschäftsführer: Prof. Dr. Günther Wess, Dr. Nikolaus Blum, Dr. Alfons Enhsen Registergericht: Amtsgericht München HRB 6466 USt-IdNr: DE 129521671 |
10000_illumina_reads.trimmed_and_processed.sortbylength.fa
Description: 10000_illumina_reads.trimmed_and_processed.sortbylength.fa
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