[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
07/09: gnu: Add python-loompy.
From: |
Ricardo Wurmus |
Subject: |
07/09: gnu: Add python-loompy. |
Date: |
Thu, 15 Feb 2018 11:19:33 -0500 (EST) |
rekado pushed a commit to branch core-updates
in repository guix.
commit 152d30c34690c00cc96053a9ae6196b26e93ba84
Author: Ricardo Wurmus <address@hidden>
Date: Wed Feb 14 14:28:00 2018 +0100
gnu: Add python-loompy.
* gnu/packages/bioinformatics.scm (python-loompy): New variable.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0206eb3..f790737 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11857,3 +11857,31 @@ use of lightweight alignments (accurate but
fast-to-compute proxies for
traditional read alignments) and massively-parallel stochastic collapsed
variational inference.")
(license license:gpl3+)))
+
+(define-public python-loompy
+ (package
+ (name "python-loompy")
+ (version "2.0.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "loompy" version))
+ (sha256
+ (base32
+ "1drgv8j1hxqzzpnfg272x9djb6j8qr798w1pc2x8ikmfgyd9gh51"))))
+ (build-system python-build-system)
+ ;; There are no tests
+ (arguments '(#:tests? #f))
+ (propagated-inputs
+ `(("python-h5py" ,python-h5py)
+ ("python-numpy" ,python-numpy)
+ ("python-scipy" ,python-scipy)
+ ("python-typing" ,python-typing)))
+ (home-page "https://github.com/linnarsson-lab/loompy")
+ (synopsis "Work with .loom files for single-cell RNA-seq data")
+ (description "The loom file format is an efficient format for very large
+omics datasets, consisting of a main matrix, optional additional layers, a
+variable number of row and column annotations. Loom also supports sparse
+graphs. This library makes it easy to work with @file{.loom} files for
+single-cell RNA-seq data.")
+ (license license:bsd-3)))
- branch core-updates updated (84fe442 -> 4aa0a1d), Ricardo Wurmus, 2018/02/15
- 03/09: gnu: Add python-future-fstrings., Ricardo Wurmus, 2018/02/15
- 01/09: gnu: augeas: Update to 1.10.1., Ricardo Wurmus, 2018/02/15
- 07/09: gnu: Add python-loompy.,
Ricardo Wurmus <=
- 02/09: gnu: Add python-tokenize-rt., Ricardo Wurmus, 2018/02/15
- 04/09: gnu: Add python-typing., Ricardo Wurmus, 2018/02/15
- 06/09: gnu: Add r-dropbead., Ricardo Wurmus, 2018/02/15
- 05/09: gnu: Add r-delayedmatrixstats., Ricardo Wurmus, 2018/02/15
- 08/09: gnu: java-testng: Update to 6.14.2., Ricardo Wurmus, 2018/02/15
- 09/09: gnu: java-jeromq: Update to 0.4.3., Ricardo Wurmus, 2018/02/15