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06/09: gnu: Add r-dropbead.
From: |
Ricardo Wurmus |
Subject: |
06/09: gnu: Add r-dropbead. |
Date: |
Thu, 15 Feb 2018 11:19:32 -0500 (EST) |
rekado pushed a commit to branch core-updates
in repository guix.
commit 3082de04c2b193bf2db2312c9ea28c18bb28bdf4
Author: Ricardo Wurmus <address@hidden>
Date: Wed Feb 14 14:27:50 2018 +0100
gnu: Add r-dropbead.
* gnu/packages/bioinformatics.scm (r-dropbead): New variable.
---
gnu/packages/bioinformatics.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 548b045..0206eb3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10658,6 +10658,35 @@ are optimized per data type and for subsetted
calculations such that both
memory usage and processing time is minimized.")
(license license:expat)))
+(define-public r-dropbead
+ (let ((commit "cf0be5ae5302684bd03e78ab65b142900bbbb840")
+ (revision "1"))
+ (package
+ (name "r-dropbead")
+ (version (string-append "0-" revision "." (string-take commit 7)))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/rajewsky-lab/dropbead.git")
+ (commit commit)))
+ (sha256
+ (base32
+ "1b2lphsc236s1rdzlijxg8yl1jnqpwcvj4x938r89rqpj93jb780"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-gridextra" ,r-gridextra)
+ ("r-gplots" ,r-gplots)
+ ("r-plyr" ,r-plyr)))
+ (home-page "https://github.com/rajewsky-lab/dropbead")
+ (synopsis "Basic exploration and analysis of Drop-seq data")
+ (description "This package offers a quick and straight-forward way to
+explore and perform basic analysis of single cell sequencing data coming from
+droplet sequencing. It has been particularly tailored for Drop-seq.")
+ (license license:gpl3))))
+
(define htslib-for-sambamba
(let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))
(package
- branch core-updates updated (84fe442 -> 4aa0a1d), Ricardo Wurmus, 2018/02/15
- 03/09: gnu: Add python-future-fstrings., Ricardo Wurmus, 2018/02/15
- 01/09: gnu: augeas: Update to 1.10.1., Ricardo Wurmus, 2018/02/15
- 07/09: gnu: Add python-loompy., Ricardo Wurmus, 2018/02/15
- 02/09: gnu: Add python-tokenize-rt., Ricardo Wurmus, 2018/02/15
- 04/09: gnu: Add python-typing., Ricardo Wurmus, 2018/02/15
- 06/09: gnu: Add r-dropbead.,
Ricardo Wurmus <=
- 05/09: gnu: Add r-delayedmatrixstats., Ricardo Wurmus, 2018/02/15
- 08/09: gnu: java-testng: Update to 6.14.2., Ricardo Wurmus, 2018/02/15
- 09/09: gnu: java-jeromq: Update to 0.4.3., Ricardo Wurmus, 2018/02/15