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13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor). |
Date: |
Wed, 6 Mar 2019 15:46:00 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit d56df35a259dd1faea7780f4ceff84a9c96c699b
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 6 21:42:39 2019 +0100
gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
* gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 26 --------------------------
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f08e1a8..7079092 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly
Drosophila melanogaster.")
based on mapping using Entrez Gene identifiers.")
(license license:artistic2.0)))
+(define-public r-org-hs-eg-db
+ (package
+ (name "r-org-hs-eg-db")
+ (version "3.7.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "org.Hs.eg.db_" version ".tar.gz"))
+ (sha256
+ (base32
+ "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
+ (properties
+ `((upstream-name . "org.Hs.eg.db")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)))
+ (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
+ (synopsis "Genome wide annotation for Human")
+ (description
+ "This package contains genome-wide annotations for Human, primarily based
+on mapping using Entrez Gene identifiers.")
+ (license license:artistic2.0)))
+
(define-public r-bsgenome-hsapiens-ucsc-hg19
(package
(name "r-bsgenome-hsapiens-ucsc-hg19")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0fffbf8..b06c8cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7980,32 +7980,6 @@ genomation package. Included are Chip Seq, Methylation
and Cage data,
downloaded from Encode.")
(license license:gpl3+)))
-(define-public r-org-hs-eg-db
- (package
- (name "r-org-hs-eg-db")
- (version "3.7.0")
- (source (origin
- (method url-fetch)
- ;; We cannot use bioconductor-uri here because this tarball is
- ;; located under "data/annotation/" instead of "bioc/".
- (uri (string-append "https://www.bioconductor.org/packages/"
- "release/data/annotation/src/contrib/"
- "org.Hs.eg.db_" version ".tar.gz"))
- (sha256
- (base32
- "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
- (properties
- `((upstream-name . "org.Hs.eg.db")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-annotationdbi" ,r-annotationdbi)))
- (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/")
- (synopsis "Genome wide annotation for Human")
- (description
- "This package contains genome-wide annotations for Human, primarily based
-on mapping using Entrez Gene identifiers.")
- (license license:artistic2.0)))
-
(define-public r-org-mm-eg-db
(package
(name "r-org-mm-eg-db")
- branch master updated (9f8698a -> 8035819), guix-commits, 2019/03/06
- 03/14: gnu: r-bsgenome-hsapiens-1000genomes-hs37d5: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 02/14: gnu: r-txdb-hsapiens-ucsc-hg19-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 01/14: gnu: r-geneplotter: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 04/14: gnu: r-bsgenome-hsapiens-ucsc-hg19: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 05/14: gnu: r-bsgenome-mmusculus-ucsc-mm9: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 09/14: gnu: r-bsgenome-dmelanogaster-ucsc-dm3: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 10/14: gnu: r-txdb-mmusculus-ucsc-mm10-knowngene: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 12/14: gnu: r-org-dm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).,
guix-commits <=
- 14/14: gnu: r-org-mm-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 07/14: gnu: r-bsgenome-celegans-ucsc-ce6: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 08/14: gnu: r-bsgenome-celegans-ucsc-ce10: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06
- 11/14: gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor)., guix-commits, 2019/03/06