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13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).


From: guix-commits
Subject: 13/14: gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
Date: Wed, 6 Mar 2019 15:46:00 -0500 (EST)

rekado pushed a commit to branch master
in repository guix.

commit d56df35a259dd1faea7780f4ceff84a9c96c699b
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:42:39 2019 +0100

    gnu: r-org-hs-eg-db: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-org-hs-eg-db): Move from here...
    * gnu/packages/bioconductor.scm (r-org-hs-eg-db): ...to here.
---
 gnu/packages/bioconductor.scm   | 26 ++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 26 --------------------------
 2 files changed, 26 insertions(+), 26 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f08e1a8..7079092 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -438,6 +438,32 @@ annotations for the genome of the model fruit fly 
Drosophila melanogaster.")
 based on mapping using Entrez Gene identifiers.")
     (license license:artistic2.0)))
 
+(define-public r-org-hs-eg-db
+  (package
+    (name "r-org-hs-eg-db")
+    (version "3.7.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "org.Hs.eg.db_" version ".tar.gz"))
+              (sha256
+               (base32
+                "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
+    (properties
+     `((upstream-name . "org.Hs.eg.db")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)))
+    (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/";)
+    (synopsis "Genome wide annotation for Human")
+    (description
+     "This package contains genome-wide annotations for Human, primarily based
+on mapping using Entrez Gene identifiers.")
+    (license license:artistic2.0)))
+
 (define-public r-bsgenome-hsapiens-ucsc-hg19
   (package
     (name "r-bsgenome-hsapiens-ucsc-hg19")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 0fffbf8..b06c8cf 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -7980,32 +7980,6 @@ genomation package.  Included are Chip Seq, Methylation 
and Cage data,
 downloaded from Encode.")
     (license license:gpl3+)))
 
-(define-public r-org-hs-eg-db
-  (package
-    (name "r-org-hs-eg-db")
-    (version "3.7.0")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "org.Hs.eg.db_" version ".tar.gz"))
-              (sha256
-               (base32
-                "1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"))))
-    (properties
-     `((upstream-name . "org.Hs.eg.db")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-annotationdbi" ,r-annotationdbi)))
-    (home-page "https://www.bioconductor.org/packages/org.Hs.eg.db/";)
-    (synopsis "Genome wide annotation for Human")
-    (description
-     "This package contains genome-wide annotations for Human, primarily based
-on mapping using Entrez Gene identifiers.")
-    (license license:artistic2.0)))
-
 (define-public r-org-mm-eg-db
   (package
     (name "r-org-mm-eg-db")



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