11/14: gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 3a08940e1a38d1f15630b6ad6678b1a79d70049d
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:35:20 2019 +0100

    gnu: r-org-ce-eg-db: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-org-ce-eg-db): Move from here...
    * gnu/packages/bioconductor.scm (r-org-ce-eg-db): ...to here.
---
 gnu/packages/bioconductor.scm   | 26 ++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 26 --------------------------
 2 files changed, 26 insertions(+), 26 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a4e436e..a55439b 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -360,6 +360,32 @@ musculus (Mouse) as provided by UCSC (mm10, December 2011) 
and stored
 in Biostrings objects.")
     (license license:artistic2.0)))
 
+(define-public r-org-ce-eg-db
+  (package
+    (name "r-org-ce-eg-db")
+    (version "3.7.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "org.Ce.eg.db_" version ".tar.gz"))
+              (sha256
+               (base32
+                "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
+    (properties
+     `((upstream-name . "org.Ce.eg.db")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-annotationdbi" ,r-annotationdbi)))
+    (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/";)
+    (synopsis "Genome wide annotation for Worm")
+    (description
+     "This package provides mappings from Entrez gene identifiers to various
+annotations for the genome of the model worm Caenorhabditis elegans.")
+    (license license:artistic2.0)))
+
 (define-public r-org-dr-eg-db
   (package
     (name "r-org-dr-eg-db")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b9973ba..9285d18 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8006,32 +8006,6 @@ downloaded from Encode.")
 on mapping using Entrez Gene identifiers.")
     (license license:artistic2.0)))
 
-(define-public r-org-ce-eg-db
-  (package
-    (name "r-org-ce-eg-db")
-    (version "3.7.0")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "org.Ce.eg.db_" version ".tar.gz"))
-              (sha256
-               (base32
-                "1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"))))
-    (properties
-     `((upstream-name . "org.Ce.eg.db")))
-    (build-system r-build-system)
-    (propagated-inputs
-     `(("r-annotationdbi" ,r-annotationdbi)))
-    (home-page "https://www.bioconductor.org/packages/org.Ce.eg.db/";)
-    (synopsis "Genome wide annotation for Worm")
-    (description
-     "This package provides mappings from Entrez gene identifiers to various
-annotations for the genome of the model worm Caenorhabditis elegans.")
-    (license license:artistic2.0)))
-
 (define-public r-org-dm-eg-db
   (package
     (name "r-org-dm-eg-db")