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Re: [ESPResSo-users] visualization problem

From: Ulf Schiller
Subject: Re: [ESPResSo-users] visualization problem
Date: Tue, 24 Jun 2014 09:02:28 +0100
User-agent: Mozilla/5.0 (X11; Linux x86_64; rv:17.0) Gecko/20130510 Thunderbird/17.0.6

On 24/06/14 08:30, Narges Nikoofard wrote:
> I am simulating a system composed of around 60 polymers in a simulation
> box of length 20. In this system, many polymers cross the boundary and
> some of their monomers appear from the other side of the box. As a
> result, the bonds are stretched across the simulation box, which makes a
> mess in the visualization.
> I wonder if there is a way to tell VMD not to show the bonds between the
> monomers (specially bonds that are stretched across the simulation box).
> I would be grateful if someone could kindly help me in this matter.

This is a VMD related question and has been discussed on the VMD mailing


Dr Ulf D Schiller
Centre for Computational Science
University College London
20 Gordon Street
London WC1H 0AJ
United Kingdom

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