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214/296: gnu: r-xcms: Update to 3.10.1.


From: guix-commits
Subject: 214/296: gnu: r-xcms: Update to 3.10.1.
Date: Fri, 12 Jun 2020 19:30:30 -0400 (EDT)

rekado pushed a commit to branch master
in repository guix.

commit ff9f179a0c09dba305ae05007a52efd47a486594
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Sat Jun 13 00:56:53 2020 +0200

    gnu: r-xcms: Update to 3.10.1.
    
    * gnu/packages/bioconductor.scm (r-xcms): Update to 3.10.1.
    [propagated-inputs]: Remove r-multtest; add r-summarizedexperiment.
    [native-inputs]: Add r-knitr.
---
 gnu/packages/bioconductor.scm | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index c89489f..3db0fdc 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -5054,14 +5054,14 @@ based on @dfn{Continuous Wavelet Transform} (CWT).")
 (define-public r-xcms
   (package
     (name "r-xcms")
-    (version "3.8.2")
+    (version "3.10.1")
     (source
      (origin
        (method url-fetch)
        (uri (bioconductor-uri "xcms" version))
        (sha256
         (base32
-         "0bfl56v3l6k31i11l09nx1yqfjy6z5yragm6k83z4w0mpgk18y7g"))))
+         "1aa11gy1v7kkamv3hsnvdx715q8f1saw9p664j6wifyjj0hx13kn"))))
     (build-system r-build-system)
     (propagated-inputs
      `(("r-biobase" ,r-biobase)
@@ -5071,14 +5071,16 @@ based on @dfn{Continuous Wavelet Transform} (CWT).")
        ("r-lattice" ,r-lattice)
        ("r-massspecwavelet" ,r-massspecwavelet)
        ("r-msnbase" ,r-msnbase)
-       ("r-multtest" ,r-multtest)
        ("r-mzr" ,r-mzr)
        ("r-plyr" ,r-plyr)
        ("r-protgenerics" ,r-protgenerics)
        ("r-rann" ,r-rann)
        ("r-rcolorbrewer" ,r-rcolorbrewer)
        ("r-robustbase" ,r-robustbase)
-       ("r-s4vectors" ,r-s4vectors)))
+       ("r-s4vectors" ,r-s4vectors)
+       ("r-summarizedexperiment" ,r-summarizedexperiment)))
+    (native-inputs
+     `(("r-knitr" ,r-knitr)))
     (home-page "https://bioconductor.org/packages/xcms/";)
     (synopsis "LC/MS and GC/MS mass spectrometry data analysis")
     (description



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