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[bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: Move to (gnu packag
From: |
zimoun |
Subject: |
[bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor). |
Date: |
Mon, 14 Sep 2020 18:07:39 +0200 |
* gnu/packages/bioinformatics.scm (r-delayedmatrixstats): Move from here...
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): ...to here.
---
gnu/packages/bioconductor.scm | 36 +++++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 36 ---------------------------------
2 files changed, 36 insertions(+), 36 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dea0862b64..e81e9cd726 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8335,3 +8335,39 @@ routines.")
"This package interfaces R with the graphviz library for plotting R graph
objects from the @code{graph} package.")
(license license:epl1.0)))
+
+(define-public r-delayedmatrixstats
+ (package
+ (name "r-delayedmatrixstats")
+ (version "1.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DelayedMatrixStats" version))
+ (sha256
+ (base32
+ "046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx"))))
+ (properties
+ `((upstream-name . "DelayedMatrixStats")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-delayedarray" ,r-delayedarray)
+ ("r-hdf5array" ,r-hdf5array)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-s4vectors" ,r-s4vectors)))
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
+ (synopsis "Functions that apply to rows and columns of DelayedMatrix
objects")
+ (description
+ "This package provides a port of the @code{matrixStats} API for use with
+@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
+contains high-performing functions operating on rows and columns of
+@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
+@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
+are optimized per data type and for subsetted calculations such that both
+memory usage and processing time is minimized.")
+ (license license:expat)))
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ffa2618458..ccdc693e08 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10900,42 +10900,6 @@ cell-specific biases, assignment of cell cycle phase,
and detection of highly
variable and significantly correlated genes.")
(license license:gpl3)))
-(define-public r-delayedmatrixstats
- (package
- (name "r-delayedmatrixstats")
- (version "1.10.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "DelayedMatrixStats" version))
- (sha256
- (base32
- "046sam0rz42ph0m7jz7v3bck7d3h2mp45gzywh5dvc1qkjq6fdxx"))))
- (properties
- `((upstream-name . "DelayedMatrixStats")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocparallel" ,r-biocparallel)
- ("r-delayedarray" ,r-delayedarray)
- ("r-hdf5array" ,r-hdf5array)
- ("r-iranges" ,r-iranges)
- ("r-matrix" ,r-matrix)
- ("r-matrixstats" ,r-matrixstats)
- ("r-s4vectors" ,r-s4vectors)))
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://github.com/PeteHaitch/DelayedMatrixStats")
- (synopsis "Functions that apply to rows and columns of DelayedMatrix
objects")
- (description
- "This package provides a port of the @code{matrixStats} API for use with
-@code{DelayedMatrix} objects from the @code{DelayedArray} package. It
-contains high-performing functions operating on rows and columns of
-@code{DelayedMatrix} objects, e.g. @code{colMedians}, @code{rowMedians},
-@code{colRanks}, @code{rowRanks}, @code{colSds}, and @code{rowSds}. Functions
-are optimized per data type and for subsetted calculations such that both
-memory usage and processing time is minimized.")
- (license license:expat)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.28.0
- [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor), zimoun, 2020/09/14
- [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#43400] [PATCH 08/12] gnu: r-beachmat: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 11/12] gnu: r-hitc: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 06/12] gnu: r-scater: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 05/12] gnu: r-scran: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 10/12] gnu: r-hdf5array: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 12/12] gnu: r-fithic: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- bug#43400: [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor), Ricardo Wurmus, 2020/09/14