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[bug#43400] [PATCH 11/12] gnu: r-hitc: Move to (gnu packages bioconducto
From: |
zimoun |
Subject: |
[bug#43400] [PATCH 11/12] gnu: r-hitc: Move to (gnu packages bioconductor). |
Date: |
Mon, 14 Sep 2020 18:07:45 +0200 |
* gnu/packages/bioinformatics.scm (r-hitc): Move from here...
* gnu/packages/bioconductor.scm (r-hitc): ...to here.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 29 -----------------------------
2 files changed, 29 insertions(+), 29 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index b6a09c4ce4..5878c43a3d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8337,6 +8337,35 @@ routines.")
objects from the @code{graph} package.")
(license license:epl1.0)))
+(define-public r-hitc
+ (package
+ (name "r-hitc")
+ (version "1.32.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "HiTC" version))
+ (sha256
+ (base32
+ "1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"))))
+ (properties `((upstream-name . "HiTC")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomeinfodb" ,r-genomeinfodb)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-matrix" ,r-matrix)
+ ("r-rcolorbrewer" ,r-rcolorbrewer)
+ ("r-rtracklayer" ,r-rtracklayer)))
+ (home-page "https://bioconductor.org/packages/HiTC")
+ (synopsis "High throughput chromosome conformation capture analysis")
+ (description
+ "The HiTC package was developed to explore high-throughput \"C\" data
+such as 5C or Hi-C. Dedicated R classes as well as standard methods for
+quality controls, normalization, visualization, and further analysis are also
+provided.")
+ (license license:artistic2.0)))
+
(define-public r-hdf5array
(package
(name "r-hdf5array")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d874fe9a13..6bbcc3fe00 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10625,35 +10625,6 @@ intra-chromosomal contact maps produced by genome-wide
genome architecture
assays such as Hi-C.")
(license license:gpl2+)))
-(define-public r-hitc
- (package
- (name "r-hitc")
- (version "1.32.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "HiTC" version))
- (sha256
- (base32
- "1jx2pfa7sbdz7xi466lz1h5xv126g56z73n0a5l2wrq28k47qaxy"))))
- (properties `((upstream-name . "HiTC")))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biostrings" ,r-biostrings)
- ("r-genomeinfodb" ,r-genomeinfodb)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-matrix" ,r-matrix)
- ("r-rcolorbrewer" ,r-rcolorbrewer)
- ("r-rtracklayer" ,r-rtracklayer)))
- (home-page "https://bioconductor.org/packages/HiTC")
- (synopsis "High throughput chromosome conformation capture analysis")
- (description
- "The HiTC package was developed to explore high-throughput \"C\" data
-such as 5C or Hi-C. Dedicated R classes as well as standard methods for
-quality controls, normalization, visualization, and further analysis are also
-provided.")
- (license license:artistic2.0)))
-
(define-public r-dropbead
(let ((commit "d746c6f3b32110428ea56d6a0001ce52a251c247")
(revision "2"))
--
2.28.0
- [bug#43400] [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor), zimoun, 2020/09/14
- [bug#43400] [PATCH 01/12] gnu: r-fourcseq: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 02/12] gnu: r-preprocesscore: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 03/12] gnu: r-rgraphviz: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 04/12] gnu: r-delayedmatrixstats: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 08/12] gnu: r-beachmat: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 11/12] gnu: r-hitc: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#43400] [PATCH 06/12] gnu: r-scater: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 05/12] gnu: r-scran: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 07/12] gnu: r-singlecellexperiment: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 10/12] gnu: r-hdf5array: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 09/12] gnu: r-rhdf5lib: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- [bug#43400] [PATCH 12/12] gnu: r-fithic: Move to (gnu packages bioconductor)., zimoun, 2020/09/14
- bug#43400: [PATCH 00/12] Move some BioConductor to (gnu packages bioconductor), Ricardo Wurmus, 2020/09/14