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[bug#47930] [PATCH] gnu: Add pbgzip.
From: |
Xinglu Chen |
Subject: |
[bug#47930] [PATCH] gnu: Add pbgzip. |
Date: |
Fri, 30 Apr 2021 10:30:49 +0200 |
On Thu, Apr 29 2021, Roel Janssen wrote:
> +(define-public pbgzip
> + (let ((commit "2b09f97b5f20b6d83c63a5c6b408d152e3982974"))
> + (package
> + (name "pbgzip")
> + (version (string-take commit 7))
Maybe you missed my previous suggestions?
https://issues.guix.gnu.org/47930#2
> + (source (origin
> + (method git-fetch)
> + (uri (git-reference
> + (url "https://github.com/nh13/pbgzip")
> + (commit commit)))
> + (file-name (string-append name "-" version))
> + (sha256
> + (base32
> + "1mlmq0v96irbz71bgw5zcc43g1x32zwnxx21a5p1f1ch4cikw1yd"))))
> + (build-system gnu-build-system)
> + (native-inputs
> + `(("autoconf" ,autoconf)
> + ("automake" ,automake)))
> + (inputs
> + `(("zlib" ,zlib)))
> + (home-page "https://github.com/nh13/pbgzip")
> + (synopsis "Parallel Block GZIP")
> + (description "This package implements parallel block gzip. For many
> +formats, in particular genomics data formats, data are compressed in
> +fixed-length blocks such that they can be easily indexed based on a (genomic)
> +coordinate order, since typically each block is sorted according to this
> order.
> +This allows for each block to be individually compressed (deflated), or more
> +importantly, decompressed (inflated), with the latter enabling random
> retrieval
> +of data in large files (gigabytes to terabytes). @code{pbgzip} is not
> limited
> +to any particular format, but certain features are tailored to genomics data
> +formats when enabled. Parallel decompression is somewhat faster, but truly
> the
^^^^^^^^^^^^^
> +speedup comes during compression.")
^^^^^^^
“but the true speedup” instead?
- [bug#47930] [PATCH] gnu: Add pbgzip., Roel Janssen, 2021/04/21
- [bug#47930] [PATCH] gnu: Add pbgzip., Xinglu Chen, 2021/04/21
- [bug#47930] [PATCH] gnu: Add pbgzip., Xinglu Chen, 2021/04/21
- [bug#47930] [PATCH] gnu: Add pbgzip., Maxime Devos, 2021/04/22
- [bug#47930] [PATCH] gnu: Add pbgzip., Efraim Flashner, 2021/04/29
- [bug#47930] [PATCH] gnu: Add pbgzip., Roel Janssen, 2021/04/29
- [bug#47930] [PATCH] gnu: Add pbgzip.,
Xinglu Chen <=
- [bug#47930] [PATCH] gnu: Add pbgzip., Roel Janssen, 2021/04/30
- [bug#47930] [PATCH] gnu: Add pbgzip., Efraim Flashner, 2021/04/30
- bug#47930: [PATCH] gnu: Add pbgzip., Roel Janssen, 2021/04/30