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[bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:07 +0200 |
* gnu/packages/bioinformatics.scm (r-sva): Move from here...
* gnu/packages/bioconductor.scm (r-sva): ...to here.
---
gnu/packages/bioconductor.scm | 31 +++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 31 -------------------------------
2 files changed, 31 insertions(+), 31 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index a9365a4018..a7b1c63b56 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3524,6 +3524,37 @@ typically represent genomic ranges of interest and the
columns represent
samples.")
(license license:artistic2.0)))
+(define-public r-sva
+ (package
+ (name "r-sva")
+ (version "3.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "sva" version))
+ (sha256
+ (base32
+ "1hpzzg3qrgkd8kwg1m5gq94cikjgk9j4l1wk58fxl49s6fmd13zy"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-edger" ,r-edger)
+ ("r-genefilter" ,r-genefilter)
+ ("r-mgcv" ,r-mgcv)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-matrixstats" ,r-matrixstats)
+ ("r-limma" ,r-limma)))
+ (home-page "https://bioconductor.org/packages/sva")
+ (synopsis "Surrogate variable analysis")
+ (description
+ "This package contains functions for removing batch effects and other
+unwanted variation in high-throughput experiment. It also contains functions
+for identifying and building surrogate variables for high-dimensional data
+sets. Surrogate variables are covariates constructed directly from
+high-dimensional data like gene expression/RNA sequencing/methylation/brain
+imaging data that can be used in subsequent analyses to adjust for unknown,
+unmodeled, or latent sources of noise.")
+ (license license:artistic2.0)))
+
(define-public r-systempiper
(package
(name "r-systempiper")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6120cb6804..2cc41b7e98 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8790,37 +8790,6 @@ resolution 5hmC data from experimental protocols such as
oxBS-Seq and
TAB-Seq.")
(license license:artistic2.0)))
-(define-public r-sva
- (package
- (name "r-sva")
- (version "3.38.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "sva" version))
- (sha256
- (base32
- "1hpzzg3qrgkd8kwg1m5gq94cikjgk9j4l1wk58fxl49s6fmd13zy"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-edger" ,r-edger)
- ("r-genefilter" ,r-genefilter)
- ("r-mgcv" ,r-mgcv)
- ("r-biocparallel" ,r-biocparallel)
- ("r-matrixstats" ,r-matrixstats)
- ("r-limma" ,r-limma)))
- (home-page "https://bioconductor.org/packages/sva")
- (synopsis "Surrogate variable analysis")
- (description
- "This package contains functions for removing batch effects and other
-unwanted variation in high-throughput experiment. It also contains functions
-for identifying and building surrogate variables for high-dimensional data
-sets. Surrogate variables are covariates constructed directly from
-high-dimensional data like gene expression/RNA sequencing/methylation/brain
-imaging data that can be used in subsequent analyses to adjust for unknown,
-unmodeled, or latent sources of noise.")
- (license license:artistic2.0)))
-
(define-public r-raremetals2
(package
(name "r-raremetals2")
--
2.30.1
- [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 19/50] gnu: r-interactivedisplaybase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 22/50] gnu: r-affy: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 21/50] gnu: r-fastseg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 27/50] gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 25/50] gnu: r-complexheatmap: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 30/50] gnu: r-vsn: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 26/50] gnu: r-genomicfiles: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 28/50] gnu: r-organismdbi: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 31/50] gnu: r-biovizbase: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 32/50] gnu: r-ensembldb: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 35/50] gnu: r-sva: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 33/50] gnu: r-mzr: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 36/50] gnu: r-motifrg: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 43/50] gnu: r-tximport: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21