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[bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages biocondu
From: |
zimoun |
Subject: |
[bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor). |
Date: |
Fri, 21 May 2021 22:26:19 +0200 |
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 26 --------------------------
2 files changed, 26 insertions(+), 26 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d027a24bf3..f224a5ecb4 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2206,6 +2206,32 @@ genome data packages and support for efficient SNP
representation.")
analysis.")
(license license:artistic2.0)))
+(define-public r-chipseq
+ (package
+ (name "r-chipseq")
+ (version "1.40.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "chipseq" version))
+ (sha256
+ (base32
+ "12pzq24aarvgxfmhcad0l5g951xqdvvi7bspgbsvlvmfkqd74j2v"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-lattice" ,r-lattice)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-shortread" ,r-shortread)))
+ (home-page "https://bioconductor.org/packages/chipseq")
+ (synopsis "Package for analyzing ChIPseq data")
+ (description
+ "This package provides tools for processing short read data from ChIPseq
+experiments.")
+ (license license:artistic2.0)))
+
(define-public r-complexheatmap
(package
(name "r-complexheatmap")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ef0d7b3007..3ee3d9d4f3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8312,32 +8312,6 @@ analysis, variant tools is project based and provides a
whole set of tools to
manipulate and analyze genetic variants.")
(license license:gpl3+)))
-(define-public r-chipseq
- (package
- (name "r-chipseq")
- (version "1.40.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "chipseq" version))
- (sha256
- (base32
- "12pzq24aarvgxfmhcad0l5g951xqdvvi7bspgbsvlvmfkqd74j2v"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biocgenerics" ,r-biocgenerics)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-lattice" ,r-lattice)
- ("r-s4vectors" ,r-s4vectors)
- ("r-shortread" ,r-shortread)))
- (home-page "https://bioconductor.org/packages/chipseq")
- (synopsis "Package for analyzing ChIPseq data")
- (description
- "This package provides tools for processing short read data from ChIPseq
-experiments.")
- (license license:artistic2.0)))
-
(define-public r-copyhelper
(package
(name "r-copyhelper")
--
2.30.1
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., (continued)
- [bug#48575] [PATCH 34/50] gnu: r-protgenerics: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 37/50] gnu: r-seqlogo: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 38/50] gnu: r-zlibbioc: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 29/50] gnu: r-affyio: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 41/50] gnu: r-rcas: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 42/50] gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 44/50] gnu: r-rhdf5filters: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 48/50] gnu: r-copyhelper: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 46/50] gnu: r-rhdf5: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 45/50] gnu: r-annotationfilter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 47/50] gnu: r-chipseq: Move to (gnu packages bioconductor).,
zimoun <=
- [bug#48575] [PATCH 50/50] gnu: r-methylkit: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 49/50] gnu: r-copywriter: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 39/50] gnu: r-rhtslib: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- [bug#48575] [PATCH 40/50] gnu: r-bamsignals: Move to (gnu packages bioconductor)., zimoun, 2021/05/21
- bug#48575: [PATCH 00/50] Move some Bioconductor packages to (gnu packages bioconductor)., Ricardo Wurmus, 2021/05/31