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[bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics.
From: |
Mădălin Ionel Patrașcu |
Subject: |
[bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics. |
Date: |
Sat, 25 Mar 2023 00:19:00 +0100 |
* gnu/packages/bioconductor.scm (r-arrayqualitymetrics): New variable.
---
gnu/packages/bioconductor.scm | 38 +++++++++++++++++++++++++++++++++++
1 file changed, 38 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6c114efd21..8792c94d29 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3190,6 +3190,44 @@ (define-public r-antiprofiles
tumor samples from healthy controls.")
(license license:artistic2.0)))
+(define-public r-arrayqualitymetrics
+ (package
+ (name "r-arrayqualitymetrics")
+ (version "3.54.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "arrayQualityMetrics" version))
+ (sha256
+ (base32 "0jz9b3f8x1aal4sskq1a09jpavhm8alggwbj3ka42fb89xymrz33"))))
+ (properties `((upstream-name . "arrayQualityMetrics")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-affy
+ r-affyplm
+ r-beadarray
+ r-biobase
+ r-genefilter
+ r-gridsvg
+ r-hmisc
+ r-hwriter
+ r-lattice
+ r-latticeextra
+ r-limma
+ r-rcolorbrewer
+ r-setrng
+ r-svglite
+ r-vsn
+ r-xml))
+ (native-inputs (list r-knitr))
+ (home-page "https://bioconductor.org/packages/arrayQualityMetrics")
+ (synopsis "Quality metrics report for microarray data sets")
+ (description
+ "This package generates microarray quality metrics reports for data in
+Bioconductor microarray data containers (ExpressionSet, NChannelSet,
AffyBatch).
+One and two color array platforms are supported.")
+ (license license:lgpl2.0+)))
+
(define-public r-arrayexpress
(package
(name "r-arrayexpress")
--
2.39.2
- [bug#62428], (continued)
- [bug#62428], Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 05/14] gnu: Add r-org-sc-sgd-db., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 08/14] gnu: Add r-parody., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 03/14] gnu: Add r-hybridmtest., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 09/14] gnu: Add r-arraymvout., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 11/14] gnu: Add r-setrng., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 07/14] gnu: Add r-mdqc., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 02/14] gnu: Add r-repmis., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 06/14] gnu: Add r-apcomplex., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 10/14] gnu: Add r-arrayquality., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 14/14] gnu: Add r-arrayqualitymetrics.,
Mădălin Ionel Patrașcu <=
- [bug#62428] [PATCH 12/14] gnu: Add r-beaddatapackr., Mădălin Ionel Patrașcu, 2023/03/24
- [bug#62428] [PATCH 13/14] gnu: Add r-beadarray., Mădălin Ionel Patrașcu, 2023/03/24