[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
R install.packages() fails: 'Peer certificate cannot be authenticated wi
From: |
myglc2 |
Subject: |
R install.packages() fails: 'Peer certificate cannot be authenticated with given CA certificates' |
Date: |
Thu, 29 Sep 2016 19:09:13 -0400 |
User-agent: |
Gnus/5.13 (Gnus v5.13) Emacs/25.1 (gnu/linux) |
With GuixSD user config ...
(use-package-modules
base ; glibc-utf8-locales
ssh ; mosh
admin ; tree
aspell ; aspell-dict-en
mail ; notmuch mu isync
statistics ; r
emacs ; emacs-ess
certs ; nss-certs
)
(packages->manifest
(list
mosh
tree
aspell-dict-en ; because emacs doesn't find system install
notmuch mu isync ; also building from git source but this gets run-time
dependencies
r emacs-ess
r-devtools r-openssl r-stringr r-xml2 r-httr
)
)
... if I try to install a CRAN package like this ...
install.packages("pROC")
... it fails like this ...
Warning: unable to access index for repository
https://rweb.crmda.ku.edu/cran/src/contrib:
cannot download all files
Warning messages:
1: In download.file(url, destfile = f, quiet = TRUE) :
URL 'https://cran.r-project.org/CRAN_mirrors.csv': status was 'Peer
certificate cannot be authenticated with given CA certificates'
2: package ‘pROC’ is not available (for R version 3.3.1)
But if I "defeat" HTTPS like this ...
options(repos=
c(
CRAN = "http://cran.rstudio.com/"
)
)
... it works. I would prefer to use HTTPS, so here is the question:
How do I get R to present the CA certificates?
TIA - George
Full R session log is shown below.
***
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-unknown-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
Natural language support but running in an English locale
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> options(STERM='iESS', str.dendrogram.last="'", editor='emacsclient',
> show.error.locations=TRUE)
> sessionInfo()
R version 3.3.1 (2016-06-21)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.utf8 LC_NUMERIC=C
[3] LC_TIME=en_US.utf8 LC_COLLATE=en_US.utf8
[5] LC_MONETARY=en_US.utf8 LC_MESSAGES=en_US.utf8
[7] LC_PAPER=en_US.utf8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
> install.packages("pROC")
Installing package into ‘/home/g1/R/x86_64-unknown-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
--- Please select a CRAN mirror for use in this session ---
Warning: failed to download mirrors file (cannot download all files); using
local file
'/gnu/store/7543j3zkn95i7ixlc9fdq9hj0zrk5yq8-r-3.3.1/lib/R/doc/CRAN_mirrors.csv'
HTTPS CRAN mirror
1: 0-Cloud [https] 2: Austria [https]
3: Belgium (Ghent) [https] 4: Chile [https]
5: China (Beijing 4) [https] 6: Colombia (Cali) [https]
7: France (Lyon 1) [https] 8: France (Lyon 2) [https]
9: France (Paris 2) [https] 10: Germany (Münster) [https]
11: Iceland [https] 12: Italy (Padua) [https]
13: Japan (Tokyo) [https] 14: Mexico (Mexico City) [https]
15: New Zealand [https] 16: Russia (Moscow) [https]
17: Spain (A Coruña) [https] 18: Spain (Madrid) [https]
19: Switzerland [https] 20: UK (Bristol) [https]
21: UK (Cambridge) [https] 22: USA (CA 1) [https]
23: USA (KS) [https] 24: USA (MI 1) [https]
25: USA (TN) [https] 26: USA (TX) [https]
27: USA (WA) [https] 28: (HTTP mirrors)
Selection: 23
Warning: unable to access index for repository
https://rweb.crmda.ku.edu/cran/src/contrib:
cannot download all files
Warning messages:
1: In download.file(url, destfile = f, quiet = TRUE) :
URL 'https://cran.r-project.org/CRAN_mirrors.csv': status was 'Peer
certificate cannot be authenticated with given CA certificates'
2: package ‘pROC’ is not available (for R version 3.3.1)
> q("no")
Process R finished at Thu Sep 29 19:07:12 2016
***
- R install.packages() fails: 'Peer certificate cannot be authenticated with given CA certificates',
myglc2 <=