Re: [igraph] Problem installing igraph R package on 64-bit Mac Pro

[Gábor Csárdi]

Michael, the error message for the binary package means that it was
compiled with the GMP library. (See http://gmp.darwinports.com/)
Perhaps if you install that, then it will be fine.

The R package is usually compiled without this library, so I don't
know why this wasn't the case for the one you downloaded.

The compilation failure is also strange a bit, it looks like R is
ignoring some configuration files in the package. Just to be sure, you
did the compilation with

R CMD INSTALL igraph_0.5.1.tar.gz

right?

G.

On Tue, Feb 10, 2009 at 4:07 PM, Michael Braun <address@hidden> wrote:
> Hi.  First, thank you for creating and maintaining the igraph R package.  I
> use it quite often and find it to be very usefull.
>
> However, I am having trouble installing a 64-bit version in R.  If I install
> the binary, downloaded from CRAN, and then load it, I get:
>
>> install.packages("igraph",repos="http://stat.cmu.edu/R/CRAN";)
> trying URL
> 'http://stat.cmu.edu/R/CRAN/bin/macosx/leopard/contrib/2.8/igraph_0.5.1.tgz'
> Content type 'application/x-gzip' length 3058038 bytes (2.9 Mb)
> opened URL
> ==================================================
> downloaded 2.9 Mb
>
>
> The downloaded packages are in
>
>  
> /var/folders/6g/6gqJUHG-FsGAUUywFq+B3U++q3w/-Tmp-//RtmpmuFm5c/downloaded_packages
>> library(igraph)
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>  unable to load shared library
> '/Library/Frameworks/R.framework/Resources/library/igraph/libs/x86_64/igraph.so':
>  
> dlopen(/Library/Frameworks/R.framework/Resources/library/igraph/libs/x86_64/igraph.so,
> 10): Symbol not found: ___gmpz_clear
>  Referenced from:
> /Library/Frameworks/R.framework/Resources/library/igraph/libs/x86_64/igraph.so
>  Expected in: dynamic lookup
>
> Error : .onLoad failed in 'loadNamespace' for 'igraph'
> Error: package/namespace load failed for 'igraph'
>>
>
>
>
>
> If I try to compile from source, I eventually get:
>
> gcc-4.2 -arch x86_64 -std=gnu99
> -I/Library/Frameworks/R.framework/Resources/include
> -I/Library/Frameworks/R.framework/Resources/include/x86_64
> -I/usr/local/include -I/usr/local/include/apophenia -I/usr/local/include
> -Wall -O3 -g -p -pg -DHAVE_INLINE  -fPIC  -Wall -O3 -g -p -pg -DHAVE_INLINE
> -c foreign.c -o foreign.o
> foreign.c: In function 'igraph_write_graph_gml':
> foreign.c:2367: error: 'PACKAGE_VERSION' undeclared (first use in this
> function)
> foreign.c:2367: error: (Each undeclared identifier is reported only once
> foreign.c:2367: error: for each function it appears in.)
> foreign.c: In function 'igraph_write_graph_dot':
> foreign.c:2603: error: 'PACKAGE_VERSION' undeclared (first use in this
> function)
> make: *** [foreign.o] Error 1
> chmod:
> /Library/Frameworks/R.framework/Resources/library/igraph/libs/x86_64/*: No
> such file or directory
> ERROR: compilation failed for package 'igraph'
> ** Removing '/Library/Frameworks/R.framework/Resources/library/igraph'
> ** Restoring previous
> '/Library/Frameworks/R.framework/Resources/library/igraph'
>
> I have no problems with a 32-bit R build.
>
> By the way, I have an Intel-based Mac Pro, running Leopard (10.5.6).  The R
> version is 2.8.0.
>
> Ideally, I'd just want to install the binary, but neither approach seems to
> work.
>
> Can you help?
>
> Thanks,
>
> Michael
>
>
>
>
>
>
>
> -------------------------------------------
> Michael Braun
> Homer A. Burnell Career Development Professor, and
>        Assistant Professor of Management Science (Marketing Group)
> MIT Sloan School of Management
> One Amherst St., E40-169
> Cambridge, MA 02142
> address@hidden
> 617-253-3436
>
>
>
>
>
>
> _______________________________________________
> igraph-help mailing list
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> http://lists.nongnu.org/mailman/listinfo/igraph-help
>



-- 
Gabor Csardi <address@hidden>     UNIL DGM