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44/296: gnu: r-bsgenome: Update to 1.56.0.
From: |
guix-commits |
Subject: |
44/296: gnu: r-bsgenome: Update to 1.56.0. |
Date: |
Fri, 12 Jun 2020 19:29:34 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit d9b23ec47c1fe82ed01b60a992f8aa564f8a731d
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 16:15:33 2020 +0200
gnu: r-bsgenome: Update to 1.56.0.
* gnu/packages/bioinformatics.scm (r-bsgenome): Update to 1.56.0.
[propagated-inputs]: Add r-matrixstats.
---
gnu/packages/bioinformatics.scm | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c018b56..ee83a97 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8332,13 +8332,13 @@ dependencies between GO terms can be implemented and
applied.")
(define-public r-bsgenome
(package
(name "r-bsgenome")
- (version "1.54.0")
+ (version "1.56.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "BSgenome" version))
(sha256
(base32
- "0nn1b3h4hmnx5whf2cmzmyxdrcf4myj8c38rwr0sw4rc07xfzndy"))))
+ "1jw8r1qm9fpg2s1cw2y4np243jjxm65j2xdy2785h8fc1b02msf6"))))
(properties
`((upstream-name . "BSgenome")))
(build-system r-build-system)
@@ -8348,6 +8348,7 @@ dependencies between GO terms can be implemented and
applied.")
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicranges" ,r-genomicranges)
("r-iranges" ,r-iranges)
+ ("r-matrixstats" ,r-matrixstats)
("r-rsamtools" ,r-rsamtools)
("r-rtracklayer" ,r-rtracklayer)
("r-s4vectors" ,r-s4vectors)
- 29/296: gnu: r-limma: Update to 3.44.1., (continued)
- 29/296: gnu: r-limma: Update to 3.44.1., guix-commits, 2020/06/12
- 27/296: gnu: r-edger: Update to 3.30.3., guix-commits, 2020/06/12
- 28/296: gnu: r-variantannotation: Update to 1.34.0., guix-commits, 2020/06/12
- 30/296: gnu: r-xvector: Update to 0.28.0., guix-commits, 2020/06/12
- 36/296: gnu: r-biostrings: Update to 2.56.0., guix-commits, 2020/06/12
- 40/296: gnu: r-genomicalignments: Update to 1.24.0., guix-commits, 2020/06/12
- 41/296: gnu: r-rtracklayer: Update to 1.48.0., guix-commits, 2020/06/12
- 43/296: gnu: r-topgo: Update to 2.40.0., guix-commits, 2020/06/12
- 37/296: gnu: r-rsamtools: Update to 2.4.0., guix-commits, 2020/06/12
- 42/296: gnu: r-genomicfeatures: Update to 1.40.0., guix-commits, 2020/06/12
- 44/296: gnu: r-bsgenome: Update to 1.56.0.,
guix-commits <=
- 46/296: gnu: r-seqpattern: Update to 1.20.0., guix-commits, 2020/06/12
- 47/296: gnu: r-genomation: Update to 1.20.0., guix-commits, 2020/06/12
- 48/296: gnu: r-seqlogo: Update to 1.54.3., guix-commits, 2020/06/12
- 31/296: gnu: r-genomicranges: Update to 1.40.0., guix-commits, 2020/06/12
- 32/296: gnu: r-biobase: Update to 2.48.0., guix-commits, 2020/06/12
- 33/296: gnu: r-annotationdbi: Update to 1.50.0., guix-commits, 2020/06/12
- 34/296: gnu: r-biomart: Update to 2.44.0., guix-commits, 2020/06/12
- 51/296: gnu: r-rhtslib: Update to 1.20.0., guix-commits, 2020/06/12
- 49/296: gnu: r-motifrg: Update to 1.31.0., guix-commits, 2020/06/12
- 25/296: gnu: r-iranges: Update to 2.22.2., guix-commits, 2020/06/12