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51/296: gnu: r-rhtslib: Update to 1.20.0.
From: |
guix-commits |
Subject: |
51/296: gnu: r-rhtslib: Update to 1.20.0. |
Date: |
Fri, 12 Jun 2020 19:29:36 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 8f08457f05ed129bec325f104e78971eb442b2ae
Author: Ricardo Wurmus <rekado@elephly.net>
AuthorDate: Fri Jun 12 16:18:02 2020 +0200
gnu: r-rhtslib: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.20.0.
[native-inputs]: Add r-knitr.
---
gnu/packages/bioinformatics.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 811f9f5..5d84977 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8630,14 +8630,14 @@ secondary structure and comparative analysis in R.")
(define-public r-rhtslib
(package
(name "r-rhtslib")
- (version "1.18.1")
+ (version "1.20.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhtslib" version))
(sha256
(base32
- "0gkbrmrcg55c9s5166ifljlx0v25rv4ijdyp4wf4c292xd6chy2l"))))
+ "186r7icrkzrni1c4n33ip7dlsfgys7hnqf0simvxrpl3yhh3ygdi"))))
(properties `((upstream-name . "Rhtslib")))
(build-system r-build-system)
;; Without this a temporary directory ends up in the Rhtslib.so binary,
@@ -8649,7 +8649,8 @@ secondary structure and comparative analysis in R.")
(inputs
`(("zlib" ,zlib)))
(native-inputs
- `(("pkg-config" ,pkg-config)))
+ `(("pkg-config" ,pkg-config)
+ ("r-knitr" ,r-knitr)))
(home-page "https://github.com/nhayden/Rhtslib")
(synopsis "High-throughput sequencing library as an R package")
(description
- 37/296: gnu: r-rsamtools: Update to 2.4.0., (continued)
- 37/296: gnu: r-rsamtools: Update to 2.4.0., guix-commits, 2020/06/12
- 42/296: gnu: r-genomicfeatures: Update to 1.40.0., guix-commits, 2020/06/12
- 44/296: gnu: r-bsgenome: Update to 1.56.0., guix-commits, 2020/06/12
- 46/296: gnu: r-seqpattern: Update to 1.20.0., guix-commits, 2020/06/12
- 47/296: gnu: r-genomation: Update to 1.20.0., guix-commits, 2020/06/12
- 48/296: gnu: r-seqlogo: Update to 1.54.3., guix-commits, 2020/06/12
- 31/296: gnu: r-genomicranges: Update to 1.40.0., guix-commits, 2020/06/12
- 32/296: gnu: r-biobase: Update to 2.48.0., guix-commits, 2020/06/12
- 33/296: gnu: r-annotationdbi: Update to 1.50.0., guix-commits, 2020/06/12
- 34/296: gnu: r-biomart: Update to 2.44.0., guix-commits, 2020/06/12
- 51/296: gnu: r-rhtslib: Update to 1.20.0.,
guix-commits <=
- 49/296: gnu: r-motifrg: Update to 1.31.0., guix-commits, 2020/06/12
- 25/296: gnu: r-iranges: Update to 2.22.2., guix-commits, 2020/06/12
- 35/296: gnu: r-biocparallel: Update to 1.22.0., guix-commits, 2020/06/12
- 38/296: gnu: r-delayedarray: Update to 0.14.0., guix-commits, 2020/06/12
- 39/296: gnu: r-summarizedexperiment: Update to 1.18.1., guix-commits, 2020/06/12
- 56/296: gnu: r-rhdf5: Update to 2.32.0., guix-commits, 2020/06/12
- 59/296: gnu: r-copywriter: Update to 2.20.0., guix-commits, 2020/06/12
- 45/296: gnu: r-impute: Update to 1.62.0., guix-commits, 2020/06/12
- 53/296: gnu: r-rcas: Update to 1.14.0., guix-commits, 2020/06/12
- 54/296: gnu: r-mutationalpatterns: Update to 2.0.0., guix-commits, 2020/06/12