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21/54: gnu: r-fastseg: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
21/54: gnu: r-fastseg: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:09 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 32ae36e96f9b076901af94c723e3d156595d5bc5
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:25:53 2021 +0200
gnu: r-fastseg: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-fastseg): Move from here...
* gnu/packages/bioconductor.scm (r-fastseg): ...to here.
---
gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 30 ------------------------------
2 files changed, 30 insertions(+), 30 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 42a01a4..07ce719 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2441,6 +2441,36 @@ other types of genomic data that produce counts,
including ChIP-seq, SAGE and
CAGE.")
(license license:gpl2+)))
+(define-public r-fastseg
+ (package
+ (name "r-fastseg")
+ (version "1.36.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fastseg" version))
+ (sha256
+ (base32
+ "1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
+ (synopsis "Fast segmentation algorithm for genetic sequencing data")
+ (description
+ "Fastseg implements a very fast and efficient segmentation algorithm.
+It can segment data from DNA microarrays and data from next generation
+sequencing for example to detect copy number segments. Further it can segment
+data from RNA microarrays like tiling arrays to identify transcripts. Most
+generally, it can segment data given as a matrix or as a vector. Various data
+formats can be used as input to fastseg like expression set objects for
+microarrays or GRanges for sequencing data.")
+ (license license:lgpl2.0+)))
+
(define-public r-genefilter
(package
(name "r-genefilter")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 104a37a..54c3945 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9196,36 +9196,6 @@ their variance is independent of the mean, and they are
usually more sensitive
and specific in detecting differential transcription.")
(license license:artistic2.0)))
-(define-public r-fastseg
- (package
- (name "r-fastseg")
- (version "1.36.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "fastseg" version))
- (sha256
- (base32
- "1ln6w93ag4wanp0nrm0pqngbfc88w95zq2kcj583hbxy885dkg4f"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-genomicranges" ,r-genomicranges)
- ("r-iranges" ,r-iranges)
- ("r-s4vectors" ,r-s4vectors)))
- (home-page "https://www.bioinf.jku.at/software/fastseg/index.html")
- (synopsis "Fast segmentation algorithm for genetic sequencing data")
- (description
- "Fastseg implements a very fast and efficient segmentation algorithm.
-It can segment data from DNA microarrays and data from next generation
-sequencing for example to detect copy number segments. Further it can segment
-data from RNA microarrays like tiling arrays to identify transcripts. Most
-generally, it can segment data given as a matrix or as a vector. Various data
-formats can be used as input to fastseg like expression set objects for
-microarrays or GRanges for sequencing data.")
- (license license:lgpl2.0+)))
-
(define-public r-keggrest
(package
(name "r-keggrest")
- 07/54: gnu: r-msnbase: Move to (gnu packages bioconductor)., (continued)
- 07/54: gnu: r-msnbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 05/54: gnu: r-bsgenome: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 03/54: gnu: r-genomicfeatures: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 12/54: gnu: r-genomation: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 10/54: gnu: r-seqpattern: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 15/54: gnu: r-mzid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 17/54: gnu: r-deseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 29/54: gnu: r-affyio: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 21/54: gnu: r-fastseg: Move to (gnu packages bioconductor).,
guix-commits <=
- 25/54: gnu: r-complexheatmap: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 20/54: gnu: r-annotationhub: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 22/54: gnu: r-affy: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 32/54: gnu: r-ensembldb: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 33/54: gnu: r-mzr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 46/54: gnu: r-rhdf5: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31