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43/54: gnu: r-tximport: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
43/54: gnu: r-tximport: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:18 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit b6e84d30ebd5b5bd1bb1027a6199601b96580fa9
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:26:15 2021 +0200
gnu: r-tximport: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
---
gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 24 ------------------------
2 files changed, 24 insertions(+), 24 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f66ba6c..f276749 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -4114,6 +4114,30 @@ dependencies between GO terms can be implemented and
applied.")
;; Any version of the LGPL applies.
(license license:lgpl2.1+)))
+(define-public r-tximport
+ (package
+ (name "r-tximport")
+ (version "1.18.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "tximport" version))
+ (sha256
+ (base32
+ "1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
+ (build-system r-build-system)
+ (native-inputs
+ `(("r-knitr" ,r-knitr)))
+ (home-page "https://bioconductor.org/packages/tximport")
+ (synopsis "Import and summarize transcript-level estimates for gene-level
analysis")
+ (description
+ "This package provides tools to import transcript-level abundance,
+estimated counts and transcript lengths, and to summarize them into matrices
+for use with downstream gene-level analysis packages. Average transcript
+length, weighted by sample-specific transcript abundance estimates, is
+provided as a matrix which can be used as an offset for different expression
+of gene-level counts.")
+ (license license:gpl2+)))
+
(define-public r-variantannotation
(package
(name "r-variantannotation")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 2fc46c7..fcaed70 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8164,30 +8164,6 @@ bound and non bound genomic regions to accurately
identify transcription
factors bound at the specific regions.")
(license license:gpl2+)))
-(define-public r-tximport
- (package
- (name "r-tximport")
- (version "1.18.0")
- (source (origin
- (method url-fetch)
- (uri (bioconductor-uri "tximport" version))
- (sha256
- (base32
- "1nxnlvl4iv2392xa72j0lzy2xnb3vrvyhfrdj9l54znwkrryyq34"))))
- (build-system r-build-system)
- (native-inputs
- `(("r-knitr" ,r-knitr)))
- (home-page "https://bioconductor.org/packages/tximport")
- (synopsis "Import and summarize transcript-level estimates for gene-level
analysis")
- (description
- "This package provides tools to import transcript-level abundance,
-estimated counts and transcript lengths, and to summarize them into matrices
-for use with downstream gene-level analysis packages. Average transcript
-length, weighted by sample-specific transcript abundance estimates, is
-provided as a matrix which can be used as an offset for different expression
-of gene-level counts.")
- (license license:gpl2+)))
-
(define-public r-rhdf5filters
(package
(name "r-rhdf5filters")
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., (continued)
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 17/54: gnu: r-deseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 29/54: gnu: r-affyio: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 21/54: gnu: r-fastseg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 25/54: gnu: r-complexheatmap: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 20/54: gnu: r-annotationhub: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 22/54: gnu: r-affy: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 32/54: gnu: r-ensembldb: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 33/54: gnu: r-mzr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor).,
guix-commits <=
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 46/54: gnu: r-rhdf5: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 48/54: gnu: r-copyhelper: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 51/54: gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1., guix-commits, 2021/05/31
- 24/54: gnu: r-gage: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 26/54: gnu: r-genomicfiles: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 27/54: gnu: r-dirichletmultinomial: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 31/54: gnu: r-biovizbase: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 36/54: gnu: r-motifrg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31