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22/54: gnu: r-affy: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
22/54: gnu: r-affy: Move to (gnu packages bioconductor). |
Date: |
Mon, 31 May 2021 10:03:10 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 22cda2e4320a59a4c26fbbbadf4064526d2b2c82
Author: zimoun <zimon.toutoune@gmail.com>
AuthorDate: Fri May 21 22:25:54 2021 +0200
gnu: r-affy: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-affy): Move from here...
* gnu/packages/bioconductor.scm (r-affy): ...to here.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 28 ----------------------------
2 files changed, 28 insertions(+), 28 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 07ce719..25094e7 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1755,6 +1755,34 @@ optimized in C++, and the main interface function
provides an easy way of
performing parallel computations on multicore machines.")
(license license:gpl2+)))
+(define-public r-affy
+ (package
+ (name "r-affy")
+ (version "1.68.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "affy" version))
+ (sha256
+ (base32
+ "0ywz548cbzk2k1njnxhlk5ydzvz2dk78ka8kx53gwrmdc4sc2b06"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-affyio" ,r-affyio)
+ ("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocmanager" ,r-biocmanager)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-zlibbioc" ,r-zlibbioc)))
+ (inputs
+ `(("zlib" ,zlib)))
+ (home-page "https://bioconductor.org/packages/affy")
+ (synopsis "Methods for affymetrix oligonucleotide arrays")
+ (description
+ "This package contains functions for exploratory oligonucleotide array
+analysis.")
+ (license license:lgpl2.0+)))
+
(define-public r-affycomp
(package
(name "r-affycomp")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 54c3945..df0d4e7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9132,34 +9132,6 @@ upon file format information. The primary focus is on
accessing the CEL and
CDF file formats.")
(license license:lgpl2.0+)))
-(define-public r-affy
- (package
- (name "r-affy")
- (version "1.68.0")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "affy" version))
- (sha256
- (base32
- "0ywz548cbzk2k1njnxhlk5ydzvz2dk78ka8kx53gwrmdc4sc2b06"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-affyio" ,r-affyio)
- ("r-biobase" ,r-biobase)
- ("r-biocgenerics" ,r-biocgenerics)
- ("r-biocmanager" ,r-biocmanager)
- ("r-preprocesscore" ,r-preprocesscore)
- ("r-zlibbioc" ,r-zlibbioc)))
- (inputs
- `(("zlib" ,zlib)))
- (home-page "https://bioconductor.org/packages/affy")
- (synopsis "Methods for affymetrix oligonucleotide arrays")
- (description
- "This package contains functions for exploratory oligonucleotide array
-analysis.")
- (license license:lgpl2.0+)))
-
(define-public r-vsn
(package
(name "r-vsn")
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., (continued)
- 01/54: gnu: r-genomicalignments: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 12/54: gnu: r-genomation: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 10/54: gnu: r-seqpattern: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 15/54: gnu: r-mzid: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 18/54: gnu: r-edaseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 17/54: gnu: r-deseq: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 29/54: gnu: r-affyio: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 21/54: gnu: r-fastseg: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 25/54: gnu: r-complexheatmap: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 20/54: gnu: r-annotationhub: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 22/54: gnu: r-affy: Move to (gnu packages bioconductor).,
guix-commits <=
- 32/54: gnu: r-ensembldb: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 33/54: gnu: r-mzr: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 34/54: gnu: r-protgenerics: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 43/54: gnu: r-tximport: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 28/54: gnu: r-organismdbi: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 42/54: gnu: r-mutationalpatterns: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 46/54: gnu: r-rhdf5: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 48/54: gnu: r-copyhelper: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31
- 51/54: gnu: r-phantompeakqualtools: Let-bind commit, set revision to 1., guix-commits, 2021/05/31
- 24/54: gnu: r-gage: Move to (gnu packages bioconductor)., guix-commits, 2021/05/31