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Re: [ext] Re: failed to install the python-umap-learn package
From: |
address@hidden |
Subject: |
Re: [ext] Re: failed to install the python-umap-learn package |
Date: |
Wed, 30 Sep 2020 13:08:59 +0000 |
Dear Simon,
Now the error is coming from python-scikit-learn-0.20.4.
Please find my answers and comments inline.
best regards,
Hong
________________________________
From: zimoun <zimon.toutoune@gmail.com>
Sent: 30 September 2020 14:11
To: Li, Hong
Cc: Ludovic Courtès; help-guix@gnu.org
Subject: Re: [ext] Re: failed to install the python-umap-learn package
On Wed, 30 Sep 2020 at 13:41, Hong.Li@mdc-berlin.de
<Hong.Li@mdc-berlin.de> wrote:
> $ guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 --
> package -p guix/new/.guix-profile -i python3 python-umap-learn
> Updating channel 'guix' from Git repository at
> 'https://git.savannah.gnu.org/git/guix.git'...
> Updating channel 'guix-bimsb' from Git repository at
> 'https://github.com/BIMSBbioinfo/guix-bimsb.git'...
> Updating channel 'guix-past' from Git repository at
> 'https://gitlab.inria.fr/guix-hpc/guix-past'...
> Updating channel 'guix-bimsb-nonfree' from Git repository at
> 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'...
[...]
> |builder for `/gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv'
> failed to produce output path
> `/gnu/store/gg8fs00h7vqx29icijxpd7w99z1p8lmf-guix-past'
> build of /gnu/store/jvffmvaz1rm0q11c57wmsp08h0slj9ym-guix-past.drv failed
The error comes from the channel 'guix-past'. Well, I will investigate later...
Therefore, you have to turn off this channel. The simplest is to run:
echo "%default-channels" > /tmp/chan.scm
guix time-machine --commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 \
-C /tmp/chan.scm \
-- package -p guix/new/.guix-profile -i python3 python-umap-learn
Hope that helps.
[hli@max-login3.mdc-berlin.net:~] $ guix time-machine
--commit=cd5406effa34fa5cfda7eb7bbd2ccaf5201cf523 -C /tmp/chan.scm -- package
-p guix/new/.guix-profile -i python-umap-learn
Updating channel 'guix' from Git repository at
'https://git.savannah.gnu.org/git/guix.git'...
guile: warning: failed to install locale
guix package: warning: Consider running 'guix pull' followed by
'guix package -u' to get up-to-date packages and security updates.
updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
The following package will be installed:
python-umap-learn 0.3.10
/gnu/store/yg68y32h1fhngn8mqpfyc8lzfg25df48-python-umap-learn-0.3.10
substitute: updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
building /gnu/store/fzcysynrdkz52f077c4hbrdmpwkb01nx-python-numba-0.46.0.drv...
updating substitutes from 'https://ci.guix.gnu.org'... 100.0%
building
/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv...
100% 'check'
[###############################################################################################################################################################################################]builder
for
`/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv'
failed with exit code 1
build of
/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv
failed
View build log at
'/gnu/var/log/guix/drvs/vx/f3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv'.
guix package: error: build of
`/gnu/store/vxf3qwhkahgzfhwp6c63vm8vky9fj5bl-python-scikit-learn-0.20.4.drv'
failed
> [hli@max-login3.mdc-berlin.net:~] $ guix time-machine
> --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- package -p
> guix/new/.guix-profile -i python3 python-umap-learn
Why this commit? 'python-umap-learn' should be broken
This commit is the most recent succeeded build from 2020-04-18 19:24:20, you
also suggested this commit before.
> Updating channel 'guix' from Git repository at
> 'https://git.savannah.gnu.org/git/guix.git'...
> Updating channel 'guix-bimsb' from Git repository at
> 'https://github.com/BIMSBbioinfo/guix-bimsb.git'...
> Updating channel 'guix-past' from Git repository at
> 'https://gitlab.inria.fr/guix-hpc/guix-past'...
> Updating channel 'guix-bimsb-nonfree' from Git repository at
> 'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'...
> Computing Guix derivation for 'x86_64-linux'... WARNING: (guix build
> emacs-build-system): imported module (guix build utils) overrides core
> binding `delete' |
> The following derivation will be built:
> /gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv
> The following profile hook will be built:
> /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv
> building package cache...
> /builder for
> `/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed
> to produce output path
> `/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache'
> build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv
> failed
> View build log at
> '/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'.
> cannot build derivation
> `/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies
> couldn't be built
I do not know why it returns an error here. What happens if you run:
guix time-machine --commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- help
?
[hli@max-login3.mdc-berlin.net:~] $ guix time-machine
--commit=cac674d99dc4a332e6210c57ec7f1b8164f66642 -- help
Updating channel 'guix' from Git repository at
'https://git.savannah.gnu.org/git/guix.git'...
Updating channel 'guix-bimsb' from Git repository at
'https://github.com/BIMSBbioinfo/guix-bimsb.git'...
Updating channel 'guix-past' from Git repository at
'https://gitlab.inria.fr/guix-hpc/guix-past'...
Updating channel 'guix-bimsb-nonfree' from Git repository at
'https://github.com/BIMSBbioinfo/guix-bimsb-nonfree.git'...
WARNING: (guix build emacs-build-system): imported module (guix build utils)
overrides core binding `delete'
Computing Guix derivation for 'x86_64-linux'... \
The following derivation will be built:
/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv
The following profile hook will be built:
/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv
building package cache...
/builder for
`/gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv' failed to
produce output path
`/gnu/store/9vpcvp00acz4lvglfs1k69a4i05p5hbw-guix-package-cache'
build of /gnu/store/yaj4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv
failed
View build log at
'/gnu/var/log/guix/drvs/ya/j4m68r6l9jhdb767psz79fm84hb6x6-guix-package-cache.drv'.
cannot build derivation
`/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv': 1 dependencies
couldn't be built
guix time-machine: error: build of
`/gnu/store/zz2557r32hsq2ksa53ix4ygaskkrs2qi-profile.drv' failed
All the best,
simon
- failed to install the python-umap-learn package, address@hidden, 2020/09/21
- Re: failed to install the python-umap-learn package, Ludovic Courtès, 2020/09/29
- Re: failed to install the python-umap-learn package, zimoun, 2020/09/29
- Re: failed to install the python-umap-learn package, Ludovic Courtès, 2020/09/30
- Re: [ext] Re: failed to install the python-umap-learn package, address@hidden, 2020/09/30
- Re: [ext] Re: failed to install the python-umap-learn package, zimoun, 2020/09/30
- Re: [ext] Re: failed to install the python-umap-learn package,
address@hidden <=
- Re: [ext] Re: failed to install the python-umap-learn package, zimoun, 2020/09/30
- Re: [ext] Re: failed to install the python-umap-learn package, address@hidden, 2020/09/30