08/15: gnu: Add r-quantsmooth.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 4fb1703a0a16f087e7b52660f384929933204adc
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu Feb 2 03:26:55 2023 +0100

    gnu: Add r-quantsmooth.
    
    * gnu/packages/bioconductor.scm (r-quantsmooth): New variable.
---
 gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
 1 file changed, 27 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index f6a7222f8d..07da3c49b3 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -8767,6 +8767,33 @@ arrays (expression/SNP/tiling/exon) at probe-level.  It 
currently supports
 Affymetrix (CEL files) and NimbleGen arrays (XYS files).")
     (license license:lgpl2.0+)))
 
+(define-public r-quantsmooth
+  (package
+    (name "r-quantsmooth")
+    (version "1.64.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "quantsmooth" version))
+       (sha256
+        (base32 "1adwws3brb01d4g6yidipnd8akkiyc3gpdr876hy57qnmcq8xipp"))))
+    (properties `((upstream-name . "quantsmooth")))
+    (build-system r-build-system)
+    (propagated-inputs (list r-quantreg))
+    (home-page "https://bioconductor.org/packages/quantsmooth";)
+    (synopsis "Quantile smoothing and genomic visualization of array data")
+    (description
+     "This package implements quantile smoothing.  It contains a dataset used
+to produce human chromosomal ideograms for plotting purposes and a collection
+of arrays that contains data of chromosome 14 of 3 colorectal tumors.  The
+package provides functions for painting chromosomal icons, chromosome or
+chromosomal idiogram and other types of plots.  Quantsmooth offers options
+like converting chromosomal ids to their numeric form, retrieving the human
+chromosomal length from NCBI data, retrieving regions of interest in a vector
+of intensities using quantile smoothing, determining cytoband position based
+on the location of the probe, and other useful tools.")
+    (license license:gpl2)))
+
 (define-public r-qvalue
   (package
     (name "r-qvalue")