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10/15: gnu: Add r-adacgh2.
From: |
guix-commits |
Subject: |
10/15: gnu: Add r-adacgh2. |
Date: |
Tue, 7 Feb 2023 05:14:14 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit e7b4b691da5ea394716b7f9d299452ae64aea648
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu Feb 2 03:26:57 2023 +0100
gnu: Add r-adacgh2.
* gnu/packages/bioconductor.scm (r-adacgh2): New variable.
Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
---
gnu/packages/bioconductor.scm | 42 ++++++++++++++++++++++++++++++++++++++++++
1 file changed, 42 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index cb610dd003..d2eb9a0daf 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -1826,6 +1826,48 @@ expression level and gene-specific dispersion, that
might facilitate the gene
ranking by fold-change and visualization.")
(license license:gpl3+)))
+(define-public r-adacgh2
+ (package
+ (name "r-adacgh2")
+ (version "2.38.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "ADaCGH2" version))
+ (sha256
+ (base32 "0g9x3lnr56035wq9ijdcri4sz5pwj8184yxm415gmsxrii9xvpfd"))))
+ (properties `((upstream-name . "ADaCGH2")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases
+ '(modify-phases %standard-phases
+ (add-after 'unpack 'python3-compatibility
+ (lambda _
+ (substitute* "inst/imagemap-example/toMap.py"
+ (("print nameMap") "print(nameMap)")))))))
+ (inputs (list python-wrapper))
+ (propagated-inputs
+ (list r-acgh
+ r-bit
+ r-cluster
+ r-dnacopy
+ r-ff
+ r-glad
+ r-snapcgh
+ r-tilingarray
+ r-waveslim))
+ (home-page "https://github.com/rdiaz02/adacgh2")
+ (synopsis "Big data analysis from aCGH experiments")
+ (description
+ "This package analyzes and creates plots of array @acronym{CGH,
+comparative genomic hybridization} data. Also, it allows usage of
+@acronym{CBS, Circular Binary Segementation}, wavelet-based smoothing, HMM,
+BioHMM, GLAD, CGHseg. Most computations are parallelized (either via forking
+or with clusters, including MPI and sockets clusters) and use @code{ff} for
+storing data.")
+ (license license:gpl3+)))
+
(define-public r-adam
(package
(name "r-adam")
- 03/15: gnu: Add r-pd-mapping50k-xba240., (continued)
- 03/15: gnu: Add r-pd-mapping50k-xba240., guix-commits, 2023/02/07
- 06/15: gnu: Add r-tilingarray., guix-commits, 2023/02/07
- 02/15: gnu: Add r-italicsdata., guix-commits, 2023/02/07
- 04/15: gnu: Add r-italics., guix-commits, 2023/02/07
- 12/15: gnu: azr3: Remove trailing #T from build phase., guix-commits, 2023/02/07
- 08/15: gnu: Add r-quantsmooth., guix-commits, 2023/02/07
- 09/15: gnu: Add r-beadarraysnp., guix-commits, 2023/02/07
- 11/15: gnu: azr3: Remove lash., guix-commits, 2023/02/07
- 15/15: gnu: azr3: Use JACK 2., guix-commits, 2023/02/07
- 07/15: gnu: Add r-snapcgh., guix-commits, 2023/02/07
- 10/15: gnu: Add r-adacgh2.,
guix-commits <=
- 01/15: gnu: Add r-glad., guix-commits, 2023/02/07
- 13/15: gnu: azr3: Use Gexp., guix-commits, 2023/02/07
- 14/15: gnu: azr3: Update to 1.2.3-1.3391a0a., guix-commits, 2023/02/07
- 05/15: gnu: Add r-manor., guix-commits, 2023/02/07