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07/15: gnu: Add r-snapcgh.
From: |
guix-commits |
Subject: |
07/15: gnu: Add r-snapcgh. |
Date: |
Tue, 7 Feb 2023 05:14:14 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit b4d90dfdb80f097e092ab4784eb9b2f6197e5d95
Author: Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de>
AuthorDate: Thu Feb 2 03:26:54 2023 +0100
gnu: Add r-snapcgh.
* gnu/packages/bioconductor.scm (r-snapcgh): New variable.
---
gnu/packages/bioconductor.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index de20271329..f6a7222f8d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -18215,6 +18215,34 @@ integrates with pathway and gene set (enrichment)
analysis tools for
large-scale and fully automated analysis.")
(license license:gpl3+)))
+(define-public r-snapcgh
+ (package
+ (name "r-snapcgh")
+ (version "1.68.0")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "snapCGH" version))
+ (sha256
+ (base32
+ "1zxvl8mkby7yb5kppddag6k9w78d1fm6adx52h4cgrfckn28w64q"))))
+ (properties `((upstream-name . "snapCGH")))
+ (build-system r-build-system)
+ (propagated-inputs
+ (list r-acgh
+ r-cluster
+ r-dnacopy
+ r-glad
+ r-limma
+ r-tilingarray))
+ (home-page "https://bioconductor.org/packages/snapCGH")
+ (synopsis "Segmentation, normalisation and processing of the aCGH data")
+ (description
+ "This package provides methods for segmenting, normalising and processing
+aCGH data. snapCGH also includes plotting functions for visualising raw and
+segmented data for individual and multiple arrays.")
+ ;; Expanded from GPL
+ (license (list license:gpl2+ license:gpl3+))))
+
(define-public r-snpstats
(package
(name "r-snpstats")
- branch master updated (8f09b385d9 -> a402c9c20f), guix-commits, 2023/02/07
- 03/15: gnu: Add r-pd-mapping50k-xba240., guix-commits, 2023/02/07
- 06/15: gnu: Add r-tilingarray., guix-commits, 2023/02/07
- 02/15: gnu: Add r-italicsdata., guix-commits, 2023/02/07
- 04/15: gnu: Add r-italics., guix-commits, 2023/02/07
- 12/15: gnu: azr3: Remove trailing #T from build phase., guix-commits, 2023/02/07
- 08/15: gnu: Add r-quantsmooth., guix-commits, 2023/02/07
- 09/15: gnu: Add r-beadarraysnp., guix-commits, 2023/02/07
- 11/15: gnu: azr3: Remove lash., guix-commits, 2023/02/07
- 15/15: gnu: azr3: Use JACK 2., guix-commits, 2023/02/07
- 07/15: gnu: Add r-snapcgh.,
guix-commits <=
- 10/15: gnu: Add r-adacgh2., guix-commits, 2023/02/07
- 01/15: gnu: Add r-glad., guix-commits, 2023/02/07
- 13/15: gnu: azr3: Use Gexp., guix-commits, 2023/02/07
- 14/15: gnu: azr3: Update to 1.2.3-1.3391a0a., guix-commits, 2023/02/07
- 05/15: gnu: Add r-manor., guix-commits, 2023/02/07